Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,417,060 – 12,417,154 |
Length | 94 |
Max. P | 0.998619 |
Location | 12,417,060 – 12,417,154 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 79.07 |
Mean single sequence MFE | -24.20 |
Consensus MFE | -17.20 |
Energy contribution | -16.82 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.19 |
Mean z-score | -2.89 |
Structure conservation index | 0.71 |
SVM decision value | 3.16 |
SVM RNA-class probability | 0.998619 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12417060 94 + 27905053 UGCCAUUGAAGUUGCAAUUUCAGUGGCAACAGCGGCAUAAAACCCAAUGCAACACAGCAACAGCAGCAGCAGCUACAUGAGAGCAGCAAACAUA- ((((((((((((....))))))))))))...((.((((........))))......((....)).)).((.(((.......))).)).......- ( -26.70) >DroSec_CAF1 16010 94 + 1 UGCCAUUGAAGCUGCAAUUUCAGUGGCAACAGCGGCAUAAAACCCAAUGCAACACAGCAACAGCAGCAGCAGCUACAUGAGAGCAGCAUACAUA- ..........(((((..((((((((((..(.((.((((........))))......((....)).)).)..))))).)))))))))).......- ( -25.90) >DroEre_CAF1 16498 86 + 1 UGCCAUUGAGGCUGCAAUUUCAGUGGCAACAGCGGUAUAAAACCCAAU--------GCAACUACAGCAGCAGCUACACGAGGGCAGCAAACAUA- ((((..((.((((((........((....))(.(((.....))))..(--------((.......))))))))).))....)))).........- ( -22.90) >DroYak_CAF1 16645 77 + 1 UGCCAUUGAAGCUGCAAUUUCAAUGGCAA--------UGCAACACA----------GCAACUUCAACGGCAGCUACACGAGGCCAGCAAACACAA (((((((((((......))))))))))).--------(((......----------)))........(((..(.....)..)))........... ( -21.30) >consensus UGCCAUUGAAGCUGCAAUUUCAGUGGCAACAGCGGCAUAAAACCCAAU________GCAACAGCAGCAGCAGCUACACGAGAGCAGCAAACAUA_ (((((((((((......)))))))))))........................................((.(((.......))).))........ (-17.20 = -16.82 + -0.38)
Location | 12,417,060 – 12,417,154 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 79.07 |
Mean single sequence MFE | -27.62 |
Consensus MFE | -16.59 |
Energy contribution | -16.71 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.11 |
Mean z-score | -2.07 |
Structure conservation index | 0.60 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.827189 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12417060 94 - 27905053 -UAUGUUUGCUGCUCUCAUGUAGCUGCUGCUGCUGUUGCUGUGUUGCAUUGGGUUUUAUGCCGCUGUUGCCACUGAAAUUGCAACUUCAAUGGCA -...((..(((((......))))).))....(((((((....((((((...(((.....)))((....)).........))))))..))))))). ( -26.30) >DroSec_CAF1 16010 94 - 1 -UAUGUAUGCUGCUCUCAUGUAGCUGCUGCUGCUGUUGCUGUGUUGCAUUGGGUUUUAUGCCGCUGUUGCCACUGAAAUUGCAGCUUCAAUGGCA -...(((((..((((..(((((((.((.((....)).))...))))))).))))..))))).(((((((...(((......)))...))))))). ( -27.80) >DroEre_CAF1 16498 86 - 1 -UAUGUUUGCUGCCCUCGUGUAGCUGCUGCUGUAGUUGC--------AUUGGGUUUUAUACCGCUGUUGCCACUGAAAUUGCAGCCUCAAUGGCA -...((.((..((((..((((((((((....))))))))--------)).))))..)).)).(((((((...(((......)))...))))))). ( -29.30) >DroYak_CAF1 16645 77 - 1 UUGUGUUUGCUGGCCUCGUGUAGCUGCCGUUGAAGUUGC----------UGUGUUGCA--------UUGCCAUUGAAAUUGCAGCUUCAAUGGCA ........((((........)))).((((((((((((((----------...(((.((--------.......)).))).)))))))))))))). ( -27.10) >consensus _UAUGUUUGCUGCCCUCAUGUAGCUGCUGCUGCAGUUGC________AUUGGGUUUUAUGCCGCUGUUGCCACUGAAAUUGCAGCUUCAAUGGCA ........(((((......))))).(((..((..(((((............(((..............))).........)))))..))..))). (-16.59 = -16.71 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:34 2006