Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,763,898 – 1,763,994 |
Length | 96 |
Max. P | 0.520582 |
Location | 1,763,898 – 1,763,994 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 85.16 |
Mean single sequence MFE | -16.76 |
Consensus MFE | -12.12 |
Energy contribution | -12.00 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.09 |
Mean z-score | -1.57 |
Structure conservation index | 0.72 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520582 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1763898 96 + 27905053 GCAACAAGGACAACACAUGGCUCACACAGCUCAUACAGCACACAACUCACAGCUCACAGCUUGAAAAAUGUUUGUUGUCAACAUUUUCAGUUUGCA (((.....(((((((.((((((.....))).))).....(((....(((.(((.....))))))....))).)))))))(((.......)))))). ( -17.80) >DroSec_CAF1 73271 73 + 1 GCAACAAGGACAACACACGGCUCACAC-----------------------AGCUCACAGCUUGAAAAAUGUUUGUUGUCAACAUUUUCAGUUUGCA (((.....(((((((.(((.....((.-----------------------(((.....))))).....))).)))))))(((.......)))))). ( -15.90) >DroSim_CAF1 75636 82 + 1 GCAACAAGGACAACACACGGCUCACACAGCUCA--------------CACAGCUCACAGCUUGAAAAAUGUUUGUUGUCAACAUUUUCAGUUUGCA (((.....(((((((.((((((.....))))..--------------((.(((.....)))))......)).)))))))(((.......)))))). ( -17.30) >DroEre_CAF1 71349 73 + 1 GCGACAAGGACAACACACGGCUCACAC-----------------------AGCUCACAGCUUGAAAAAUGUUGGUUGUCAACAUUUUCAGUUUGCA ((((....((((((....((((.....-----------------------))))..((((((....)).)))))))))).((.......)))))). ( -15.20) >DroYak_CAF1 72362 73 + 1 GCAACAAGGACAACACACGGCUCACAG-----------------------AGCUCACAGCUUGAAAAAUGUUUGUUGUCAACAUUUUCAGUUUGCA (((.....(((((((.(((.......(-----------------------(((.....))))......))).)))))))(((.......)))))). ( -17.62) >consensus GCAACAAGGACAACACACGGCUCACAC_______________________AGCUCACAGCUUGAAAAAUGUUUGUUGUCAACAUUUUCAGUUUGCA (((.....(((((((.(((..(((..........................(((.....))))))....))).)))))))(((.......)))))). (-12.12 = -12.00 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:03 2006