Locus 4729

Sequence ID 3R_DroMel_CAF1
Location 12,414,756 – 12,414,850
Length 94
Max. P 0.910764
window7766

overview

Window 6

Location 12,414,756 – 12,414,850
Length 94
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 89.24
Mean single sequence MFE -28.84
Consensus MFE -22.78
Energy contribution -23.86
Covariance contribution 1.08
Combinations/Pair 1.07
Mean z-score -1.99
Structure conservation index 0.79
SVM decision value 1.07
SVM RNA-class probability 0.910764
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12414756 94 + 27905053
-GAUGACUGGGUGAUGUGUGAGGUCUAGGCUAAGGUUAUGACAUGGCCUGGCCA-AGCAUUGCCAAAGAAUUUUGGAUAAACAAAAACUGCGGUUG
-...(((((((..((((....((.((((((((.(.......).)))))))))).-.))))..))......(((((......)))))....))))). ( -32.00)
>DroSec_CAF1 13725 94 + 1
-GGUGACUGGGUGAUGUGUGAGGUCUAGGCUAAGGUUAUGACAUGGCCUGGCCA-AGCAUUGCCAAAGAAUUUUGGGUAAACAAAAACUGCGGUUG
-...(((((((..((((....((.((((((((.(.......).)))))))))).-.))))..))......(((((......)))))....))))). ( -32.00)
>DroEre_CAF1 14141 95 + 1
GGAUGACUGGGUGAUGUGUGAGGUCUAGGCGAAGGUUAUGACAUGGCCUGGCCA-AGCAUUGCCAAAGAGUUUUGGGUAAACAAAAACUGCGGCCG
((.((....((..((((....((.((((((.(.(.......).).)))))))).-.))))..))....((((((.(.....).)))))).)).)). ( -28.50)
>DroYak_CAF1 14230 94 + 1
-GUUGACUGGGUGAUGUGUGAGGUCUAGGCUAAGGUUAUGACAUGGCCUGGCCA-AGCAUUGCCAAAGAAUUUUGGGUAAACAAAAACUGCGGCCG
-((((...(((..((((....((.((((((((.(.......).)))))))))).-.))))..))......(((((......))))).)..)))).. ( -29.60)
>DroAna_CAF1 13930 92 + 1
-GGU--UGGGCUGAUGUGUGAGGUCUAGGCUAAGGUUAUGACAUGACCGGGCCAAAACAUUGUCA-GGAAGUUUGUGUAAACAACAACUGCGGUAC
-(((--((..(((((((((..(((((.......((((((...)))))))))))...))).)))))-).....((((....)))))))))....... ( -22.11)
>consensus
_GAUGACUGGGUGAUGUGUGAGGUCUAGGCUAAGGUUAUGACAUGGCCUGGCCA_AGCAUUGCCAAAGAAUUUUGGGUAAACAAAAACUGCGGUCG
......(((((((((((....((.((((((((.(.......).))))))))))...))))))))......(((((......)))))....)))... (-22.78 = -23.86 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:32 2006