Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,412,805 – 12,412,901 |
Length | 96 |
Max. P | 0.667009 |
Location | 12,412,805 – 12,412,901 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 99.31 |
Mean single sequence MFE | -30.00 |
Consensus MFE | -30.00 |
Energy contribution | -30.00 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.51 |
Structure conservation index | 1.00 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.667009 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12412805 96 + 27905053 AAAGGGGGCGUGUCGUGGCCGGGUACCCGGUGCUUGUCUGUGUAAUUUACUAUUAUUUUUUAAGCACUUUGCUUUUAUGCUCGCCGCUGCUGCUAC ...(((((((((....((((((....)))(((((((.....(((((.....)))))....)))))))...)))..))))))).))((....))... ( -30.00) >DroSec_CAF1 11751 96 + 1 AAAGGGGGCGUGUCGUGGCCGGGCACCCGGUGCUUGUCUGUGUAAUUUACUAUUAUUUUUUAAGCACUUUGCUUUUAUGCUCGCCGCUGCUGCUAC ...(((((((((....((((((....)))(((((((.....(((((.....)))))....)))))))...)))..))))))).))((....))... ( -30.00) >DroSim_CAF1 11419 96 + 1 AAAGGGGGCGUGUCGUGGCCGGGCACCCGGUGCUUGUCUGUGUAAUUUACUAUUAUUUUUUAAGCACUUUGCUUUUAUGCUCGCCGCUGCUGCUAC ...(((((((((....((((((....)))(((((((.....(((((.....)))))....)))))))...)))..))))))).))((....))... ( -30.00) >consensus AAAGGGGGCGUGUCGUGGCCGGGCACCCGGUGCUUGUCUGUGUAAUUUACUAUUAUUUUUUAAGCACUUUGCUUUUAUGCUCGCCGCUGCUGCUAC ...(((((((((....((((((....)))(((((((.....(((((.....)))))....)))))))...)))..))))))).))((....))... (-30.00 = -30.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:31 2006