Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,410,743 – 12,410,837 |
Length | 94 |
Max. P | 0.982643 |
Location | 12,410,743 – 12,410,837 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 93.64 |
Mean single sequence MFE | -28.38 |
Consensus MFE | -24.81 |
Energy contribution | -24.95 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.07 |
Mean z-score | -2.32 |
Structure conservation index | 0.87 |
SVM decision value | 1.92 |
SVM RNA-class probability | 0.982643 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12410743 94 + 27905053 -AGCUCAUGUAUUUCAGCUGUUAAUUGUCAAGUUUCGGCUGAAAUGUCGCUACCAAUUUAUCAAGCGCCUCAGGAGCAGGCUCCCCGUGCCUUUU -.((((.(((((((((((((..((((....)))).))))))))))).((((............))))...)).))))((((.......))))... ( -28.30) >DroSec_CAF1 9696 94 + 1 -AGCUCAUGUAUUUCAGCUGUUAAUUGUCAAGUUUCGGCUGAAAUGUCGCUACCAAUUUAUCAAGCGCCUCAGGAGCAGGCUCCCCGUGCCUUUU -.((((.(((((((((((((..((((....)))).))))))))))).((((............))))...)).))))((((.......))))... ( -28.30) >DroSim_CAF1 9368 94 + 1 -AGCUCAUGUAUUUCAGCUGUUAAUUGUCAAGUUUCGGCUGAAAUGUCGCUACCAAUUUAUCAAGCGCCUCAGGAGCAGACUCCCCGUGCCUUUU -(((.....(((((((((((..((((....)))).)))))))))))..))).............((((....((((....))))..))))..... ( -24.00) >DroEre_CAF1 10165 94 + 1 -AGCUCAUGUAUUUCAGCUGUUAAUUGUCAAGUUUCGGCUGAAAUGUCGCUGCCAAUUUAUCAAGCGCCUCAGGAGCAGGCUCCCCGUGCCUUUU -.((((.(((((((((((((..((((....)))).))))))))))).((((............))))...)).))))((((.......))))... ( -29.20) >DroYak_CAF1 10048 94 + 1 -AGCUCAUGUAUUUCAGCUGUUAAUUGUCAAGUUUCGGCUGAAAUGUCGCUACCAAUUUAUCAGGCGCCUCAGGAGCAGGCUCCCUGUGCCUUUU -(((.....(((((((((((..((((....)))).)))))))))))..)))...........((((((....((((....))))..))))))... ( -29.60) >DroAna_CAF1 9986 94 + 1 GAGCUCAUGUAUUUCAGCUGUUAAUUGUCAAGUUUUGGCUGAAAUGUCGCUGCCAAUUUAUCAGGCGCCUCAAGACCAGGCAGGGACUG-CUCUC ((((......((((((((((..((((....)))).))))))))))(((.(((((........((....))........))))).))).)-))).. ( -30.89) >consensus _AGCUCAUGUAUUUCAGCUGUUAAUUGUCAAGUUUCGGCUGAAAUGUCGCUACCAAUUUAUCAAGCGCCUCAGGAGCAGGCUCCCCGUGCCUUUU ..((((...(((((((((((..((((....)))).))))))))))).((((............))))......))))((((.......))))... (-24.81 = -24.95 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:30 2006