Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,404,720 – 12,404,824 |
Length | 104 |
Max. P | 0.737647 |
Location | 12,404,720 – 12,404,824 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 88.31 |
Mean single sequence MFE | -25.81 |
Consensus MFE | -20.47 |
Energy contribution | -21.36 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.12 |
Mean z-score | -2.55 |
Structure conservation index | 0.79 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.737647 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12404720 104 + 27905053 CAUUGAACAGAAAAAGCAGCUUCUUUUUGCGGAAAUCGGAGAUCGACAUUAUUGUGUUGGUUUUUUUUUUUGUGUGUUUGAUUUACCGCUGGUUGUUUUCUUUA ........(((.(((((((((.......(((((((((((((((((((((....)))))))))))..............)))))).)))).))))))))).))). ( -26.13) >DroSec_CAF1 3859 103 + 1 CAUUGAACAGAAAAAGCAGCUUCUUUUUGCGGAAAUCGGAGAUCGACAUUAUUGUGUUGGUUUUU-UUUUUGUGUGUUUGAUUUACCGCUGGUUGUUUUCUUUA ........(((.(((((((((.......(((((((((((((((((((((....))))))))))).-............)))))).)))).))))))))).))). ( -26.21) >DroSim_CAF1 3462 101 + 1 CAUUGAACAGAAAAAGCAGCUUCUUUUUGCGGAAAUCGGAGAUCGACAUUAUUGUGUUGGUUUU---UUUUGUGUGUUUGAUUUACCGCUGGUUGUUUUCUUUA ........(((.(((((((((.......(((((((((((((((((((((....)))))))))))---...........)))))).)))).))))))))).))). ( -26.40) >DroEre_CAF1 4070 99 + 1 CAUUGAACAGAAAAAGCAGCUUCUUUUUGCGGAAAUCGGAGAUCGACAUUAUUGUGUUGGUUUUA-UUUCU---C-UUUGAUUUACCGCUGGUUGUUUUCUUUA ........(((.(((((((((.......(((((((((((((((((((((....))))))).....-....)---)-)))))))).)))).))))))))).))). ( -28.30) >DroYak_CAF1 3988 100 + 1 CAUUGAACAGAAAAAGCAGCUUCUUUUUGCGGAAAUCGGAGAUCGACAUUAUUGUGUUGGUUUUU-UUUUU---CGUUUGAUUUAUCGCUGGUUGUUUUCUUUA ........((((((..((((....((..(((((((..((((((((((((....))))))))))))-.))))---)))..))......))))....))))))... ( -25.30) >DroAna_CAF1 3915 88 + 1 CAUUGAACAGGAAGAGCAGCUUCUUUUUGCGGAAAUCGGAGAUCGACAUUGUUGUGUUGUUUUUC-UUU---------------AUUUCGGGGCGUUUUCCUUA ........(((((((((.((........)).(((((.(((((.((((((....))))))....))-)))---------------)))))...)).))))))).. ( -22.50) >consensus CAUUGAACAGAAAAAGCAGCUUCUUUUUGCGGAAAUCGGAGAUCGACAUUAUUGUGUUGGUUUUU_UUUUU___UGUUUGAUUUACCGCUGGUUGUUUUCUUUA ........(((.(((((((((.......(((((((((((((((((((((....)))))))))))..............)))))).)))).))))))))).))). (-20.47 = -21.36 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:27 2006