Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,401,827 – 12,401,919 |
Length | 92 |
Max. P | 0.660325 |
Location | 12,401,827 – 12,401,919 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 82.54 |
Mean single sequence MFE | -30.35 |
Consensus MFE | -20.32 |
Energy contribution | -20.15 |
Covariance contribution | -0.17 |
Combinations/Pair | 1.08 |
Mean z-score | -1.98 |
Structure conservation index | 0.67 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660325 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12401827 92 - 27905053 ----CAACUGGAGGUAGUGG------AACUUCGACUGCUAUGAAGCCACAAAAGUUCUGGCCACCGGCCAGGGAACUUGAUGGAGUUUU-CUGCCAAAAUAUG ----........(((((.((------(((((((...(((....)))..(((...((((((((...))))))))...))).)))))))))-)))))........ ( -29.70) >DroPse_CAF1 6426 102 - 1 GGGCCCAAU-GAGGUAGCGGCAGCAUAACUUCAAAUGCAACAAAGCCACAAAAGUUUUGGCCAGUGGCCAAAGGACUUGACGGAGUUUUGCUGCCCAAAUAUG ..(((....-..))).(.(((((((.((((((....((......)).....(((((((((((...))))))..)))))...)))))).))))))))....... ( -34.50) >DroSim_CAF1 629 92 - 1 ----CAACUGGAGGUAGUGG------AACUUCGACUGCUAUGAAGCCACAAAAGUUCUGGCCACCGUCCAGGGAACUUGAUGGAGUUUU-CUGCCAAAAUAUG ----.....((.(((...((------(((((.....(((....))).....))))))).))).))...(((..(((((....)))))..-))).......... ( -24.80) >DroEre_CAF1 1123 92 - 1 ----CGACCGAAGGUAGUGG------AACUUGGACUGCCAUGAAGCCACAAAAGUUCUGGCCAACGGCCAGGGAACUUGAUGGAGUUUU-CUGCCAAAAUAUG ----........(((((.((------(((((((....))).....((((((...((((((((...))))))))...))).)))))))))-)))))........ ( -28.60) >DroYak_CAF1 1049 92 - 1 ----CGACUGGAGGUAGUGG------AACUUCGACUGCUAUGAAGCCACAAAAGUUCUGGCCACCGGCCAGGCAACUUGAUGGAGUUUU-CUGCCAAAAUAUG ----........(((((.((------(((((((...(((....))).....(((((((((((...)))))))..))))..)))))))))-)))))........ ( -28.80) >DroPer_CAF1 8996 102 - 1 GGGCCGAAU-GAGGUAGCGGCAGCAUAACUUCAAAUGCAACAAAGCCACAAAAGUUUUGGCCAGUGGCCAAAGGACUUGACGGAGUUUUGCUGCCCAAAUAUG ..(((....-..))).(.(((((((.((((((....((......)).....(((((((((((...))))))..)))))...)))))).))))))))....... ( -35.70) >consensus ____CGACUGGAGGUAGUGG______AACUUCGACUGCUAUGAAGCCACAAAAGUUCUGGCCACCGGCCAGGGAACUUGAUGGAGUUUU_CUGCCAAAAUAUG ............(((((.........((((((....((......))..(((...((((((((...))))))))...)))..))))))...)))))........ (-20.32 = -20.15 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:24 2006