Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,392,627 – 12,392,738 |
Length | 111 |
Max. P | 0.610455 |
Location | 12,392,627 – 12,392,738 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 90.54 |
Mean single sequence MFE | -33.03 |
Consensus MFE | -26.53 |
Energy contribution | -26.21 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.11 |
Mean z-score | -1.54 |
Structure conservation index | 0.80 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.610455 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12392627 111 - 27905053 -UGGUGUUUUCACGUACCACGGUGCGUAUGAUUUAUGCAUUUUCAAGCGGCUUUCCUGCUCCUGUAGCAAUUGCUUCGCAUAGAACG------GCGGCGAAUGAAAUGCAAUUAAAAU -..........((((((....))))))........((((((((...((.((((((.(((......(((....)))..)))..))).)------)).))....))))))))........ ( -28.20) >DroEre_CAF1 61480 111 - 1 -UGCUGUUUUCACGUACCACGGUGCGUAUGAUUUAUGCAUUUUCAAGGGGCUUUCCUGCUCCUGCUGCAAUUGCUUCGCACAGAACG------GCGGCGAAUGAAAUGCAAUUAAAAU -..........((((((....))))))........(((((((.((((((((......))))))(((((....(.(((.....)))).------)))))...)))))))))........ ( -33.50) >DroYak_CAF1 58770 111 - 1 -UGCUGUUUUCACGUACCACGGUGCGUAUGAUUUAUGCAUUUUCAAGAGGCUUUCCUGCUCCUGCUGCAAUUGCUUCGCACAGAACG------GCGGCGAAUGAAAUGCAAUUAAAAU -..........((((((....))))))........(((((((.((((..((......))..))(((((....(.(((.....)))).------)))))...)))))))))........ ( -28.20) >DroAna_CAF1 43303 118 - 1 UGGCAACUUUCACGUACCACGGUGCGUAUGAUUUAUGCAUUUCGAAGCGGCUUUUCUGCUCCUGCUGCAAUUGCUUCGCACAGAGAGCAACGAGCGGCGAAUGAAAUGCAAUUAAAAU .(....)....((((((....))))))........(((((((((..((.((((...((((((((.(((.........)))))).)))))..)))).))...)))))))))........ ( -42.20) >consensus _UGCUGUUUUCACGUACCACGGUGCGUAUGAUUUAUGCAUUUUCAAGCGGCUUUCCUGCUCCUGCUGCAAUUGCUUCGCACAGAACG______GCGGCGAAUGAAAUGCAAUUAAAAU ...........((((((....))))))........((((((((..((.(((......))).))(((((......(((.....)))........)))))....))))))))........ (-26.53 = -26.21 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:23 2006