Locus 4721

Sequence ID 3R_DroMel_CAF1
Location 12,391,804 – 12,391,897
Length 93
Max. P 0.814323
window7755

overview

Window 5

Location 12,391,804 – 12,391,897
Length 93
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 97.85
Mean single sequence MFE -20.53
Consensus MFE -19.85
Energy contribution -19.97
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -1.87
Structure conservation index 0.97
SVM decision value 0.66
SVM RNA-class probability 0.814323
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12391804 93 - 27905053
AUGAGAACACAUAAUUUGGUUAGUCAAAACGUUUAGUAACGAGAUCCACGAGUACGAAAGUAACAAAAGCCAGGAGGGUUACGAUUAGCUAAG
...............((((((((((....((((....)))).(((((.....(((....))).(........)..)))))..)))))))))). ( -19.60)
>DroEre_CAF1 60642 93 - 1
AUGAGAACACAUAAUUUGGUUAGUCAAAACGUUUAGUAACGAGAUCCACGAGUACGAAAGCAACAAAAGCCAGGAGGGUUACGACUAGCUAAG
...............((((((((((....((((....)))).(((((.((....))...((.......)).....)))))..)))))))))). ( -20.10)
>DroYak_CAF1 57937 93 - 1
AUGAGAACACAUAAUUUGGUUAGUCAAAACGUUUAGUAACGAGAUCCACGAGUACGAAAGUAACAAAAACCAGGAGGGUUACGACUAGCUAAG
...............((((((((((....((((....)))).(((((.....(((....))).(........)..)))))..)))))))))). ( -21.90)
>consensus
AUGAGAACACAUAAUUUGGUUAGUCAAAACGUUUAGUAACGAGAUCCACGAGUACGAAAGUAACAAAAGCCAGGAGGGUUACGACUAGCUAAG
...............((((((((((....((((....)))).(((((.....(((....))).(........)..)))))..)))))))))). (-19.85 = -19.97 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:22 2006