Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,390,912 – 12,391,032 |
Length | 120 |
Max. P | 0.913505 |
Location | 12,390,912 – 12,391,032 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.83 |
Mean single sequence MFE | -60.35 |
Consensus MFE | -38.72 |
Energy contribution | -39.92 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.33 |
Mean z-score | -2.56 |
Structure conservation index | 0.64 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.907370 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12390912 120 + 27905053 GGAGAACCUGGUGAGCCAGGAGAGCCCGGAUCUUUGGGUCCACGAGGAUUGGACGGACUGCCCGGUGAGCCGGGCAUCGAAGGACCACCGGGACUGCCAGGAUACCAGGGUCCACCAGGA ......(((((((..((.((..(((((((.((((((((((((.......)))))....(((((((....))))))))))))))....))))).)).)).((...))..))..))))))). ( -57.50) >DroGri_CAF1 41063 120 + 1 GGUGACGCGGGCGAGCCUGGAGAGCCGGGCUCCUUGGGUCCACGUGGCUUAGAUGGUUUACCGGGCGAGCCGGGAAUUGAGGGACCACCUGGUCUGCCGGGCUAUCAAGGACCACCAGGU .(((((.((((.((((((((....)))))))))))).)).)))(((((((.(((((....((.((((..(((((...((......)))))))..)))).))))))).))).))))..... ( -57.20) >DroEre_CAF1 59767 120 + 1 GGAGAACCUGGCGAGCCAGGAGAGCCCGGAUCUUUGGGUCCGCGAGGAUUGGACGGACUGCCCGGUGAGCCGGGCAUCGAAGGACCGCCGGGGCUGCCGGGAUACCAGGGUCCACCAGGA ......(((((.(..((.((..(((((.........(((((....)))))((.(((..(((((((....)))))))((....))))))).))))).))((....))..))..).))))). ( -60.50) >DroWil_CAF1 22006 120 + 1 GGCGAGCCUGGAGAACCAGGUGAACCCGGUUCGCUGGGUCCCAGAGGUUUGGAUGGUUUACCAGGCGAGCCUGGCAUUGAAGGACCUCCCGGUUUGCCUGGCUACCAAGGUCCUCCUGGU ((((((((.((((((((.((....)).)))))....(((((((((((((((..(((....)))..)))))))....)))..)))))))).)))))))).....((((.((....)))))) ( -54.40) >DroYak_CAF1 57036 120 + 1 GGAGAACCUGGUGAGCCAGGAGAGCCCGGAUCUUUGGGUCCGCGAGGAUUAGACGGACUGCCCGGGGAGCCGGGCAUCGAAGGACCACCGGGACUGCCGGGAUACCAGGGUCCACCAGGU .....((((((((..((.((..(((((((.(((((((((((((........).))))))((((((....))))))..))))))....))))).)).))((....))..))..)))))))) ( -63.10) >DroAna_CAF1 41610 120 + 1 GGAGAGGCAGGCGAGCCGGGAGAACCCGGUUCGUUGGGUCCCCGUGGCCUGGACGGCCUGCCUGGAGAGCCGGGCAUCGAAGGACCUCCCGGUCUGCCAGGAUACCAGGGACCGCCUGGC ....((((.(((((((((((....))))))))))).((((((...((((.....))))..((((((((.(((((..((....))...)))))))).)))))......))))))))))... ( -69.40) >consensus GGAGAACCUGGCGAGCCAGGAGAGCCCGGAUCUUUGGGUCCACGAGGAUUGGACGGACUGCCCGGCGAGCCGGGCAUCGAAGGACCACCGGGUCUGCCGGGAUACCAGGGUCCACCAGGU ......(((((((..((.((....(((((.(((((.((((((.......)))))....(((((((....))))))).).)))))...)))))....)).((...))..))..))))))). (-38.72 = -39.92 + 1.20)
Location | 12,390,912 – 12,391,032 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.83 |
Mean single sequence MFE | -53.43 |
Consensus MFE | -36.89 |
Energy contribution | -37.34 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.30 |
Mean z-score | -2.45 |
Structure conservation index | 0.69 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913505 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12390912 120 - 27905053 UCCUGGUGGACCCUGGUAUCCUGGCAGUCCCGGUGGUCCUUCGAUGCCCGGCUCACCGGGCAGUCCGUCCAAUCCUCGUGGACCCAAAGAUCCGGGCUCUCCUGGCUCACCAGGUUCUCC .(((((((..((..((...(((((..(((...(.(((((..((((((((((....))))))).............))).))))))...))))))))....)).))..)))))))...... ( -51.71) >DroGri_CAF1 41063 120 - 1 ACCUGGUGGUCCUUGAUAGCCCGGCAGACCAGGUGGUCCCUCAAUUCCCGGCUCGCCCGGUAAACCAUCUAAGCCACGUGGACCCAAGGAGCCCGGCUCUCCAGGCUCGCCCGCGUCACC (((.((((..(((.((.((((.(((...(((.(((((..........((((.....))))............))))).))).((...)).))).)))).)).)))..)))).).)).... ( -42.35) >DroEre_CAF1 59767 120 - 1 UCCUGGUGGACCCUGGUAUCCCGGCAGCCCCGGCGGUCCUUCGAUGCCCGGCUCACCGGGCAGUCCGUCCAAUCCUCGCGGACCCAAAGAUCCGGGCUCUCCUGGCUCGCCAGGUUCUCC .(((((((..((..((...(((((..((....))((........(((((((....)))))))((((((.........))))))))......)))))....)).))..)))))))...... ( -54.00) >DroWil_CAF1 22006 120 - 1 ACCAGGAGGACCUUGGUAGCCAGGCAAACCGGGAGGUCCUUCAAUGCCAGGCUCGCCUGGUAAACCAUCCAAACCUCUGGGACCCAGCGAACCGGGUUCACCUGGUUCUCCAGGCUCGCC ....(((((((((((((.((...))..)))..)))))))))).......(((..((((((.......((((......)))).......((((((((....)))))))).))))))..))) ( -49.90) >DroYak_CAF1 57036 120 - 1 ACCUGGUGGACCCUGGUAUCCCGGCAGUCCCGGUGGUCCUUCGAUGCCCGGCUCCCCGGGCAGUCCGUCUAAUCCUCGCGGACCCAAAGAUCCGGGCUCUCCUGGCUCACCAGGUUCUCC ((((((((..((..((...(((((..(((....(((........(((((((....)))))))((((((.........)))))))))..))))))))....)).))..))))))))..... ( -54.60) >DroAna_CAF1 41610 120 - 1 GCCAGGCGGUCCCUGGUAUCCUGGCAGACCGGGAGGUCCUUCGAUGCCCGGCUCUCCAGGCAGGCCGUCCAGGCCACGGGGACCCAACGAACCGGGUUCUCCCGGCUCGCCUGCCUCUCC (.(((((((((((((....(((((.((((((((..(((....))).))))).))))))))..((((.....)))).))))))))....((.(((((....))))).))))))).)..... ( -68.00) >consensus ACCUGGUGGACCCUGGUAUCCCGGCAGACCCGGUGGUCCUUCGAUGCCCGGCUCACCGGGCAGUCCGUCCAAUCCUCGCGGACCCAAAGAUCCGGGCUCUCCUGGCUCGCCAGGUUCUCC .(((((((..((..((...(((((........(.(((((.....(((((((....)))))))(......).........))))))......)))))....)).))..)))))))...... (-36.89 = -37.34 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:20 2006