| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,386,428 – 12,386,534 |
| Length | 106 |
| Max. P | 0.993220 |
| Location | 12,386,428 – 12,386,534 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 84.08 |
| Mean single sequence MFE | -31.27 |
| Consensus MFE | -28.10 |
| Energy contribution | -28.43 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.86 |
| Structure conservation index | 0.90 |
| SVM decision value | 2.38 |
| SVM RNA-class probability | 0.993220 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12386428 106 + 27905053 GAUCUGCCAACCUAAA-----AACCAAACAACCAACCACACAAAUGCCAACUGCUGCCAUCUUGGCAUUGAUGUGGAACUGUUGUCGUCGAAUACGAUGGCAAGGAGCAAC ....(((...(((...-----..............(((((..((((((((.((....))..))))))))..)))))......((((((((....))))))))))).))).. ( -31.60) >DroEre_CAF1 55494 95 + 1 ----------------AACCAAACCAAACAGCCAACCACACAAAUGCCAACUGCUGCCAUCUUGGCAUUGAUGUGGAACUGUUGUCGUCGAAAACGAUGGCAAAAAGCAGC ----------------..............((...(((((..((((((((.((....))..))))))))..))))).....(((((((((....)))))))))...))... ( -29.70) >DroYak_CAF1 52297 111 + 1 GCUCUGCCAACCUAAAAACCAAACCAAACAACCAACCACACAAAUGCCAACUGCUGCCAUCUUGGCAUUGAUGUGGAACUGUUGUCGUCGAAUACGAUGGCAAAAAGCAGC ...((((............................(((((..((((((((.((....))..))))))))..))))).....(((((((((....)))))))))...)))). ( -32.50) >consensus G_UCUGCCAACCUAAAAACCAAACCAAACAACCAACCACACAAAUGCCAACUGCUGCCAUCUUGGCAUUGAUGUGGAACUGUUGUCGUCGAAUACGAUGGCAAAAAGCAGC ...................................(((((..((((((((.((....))..))))))))..)))))..((((((((((((....))))))))....)))). (-28.10 = -28.43 + 0.33)
| Location | 12,386,428 – 12,386,534 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 84.08 |
| Mean single sequence MFE | -36.70 |
| Consensus MFE | -29.53 |
| Energy contribution | -29.87 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.79 |
| Structure conservation index | 0.80 |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.967416 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12386428 106 - 27905053 GUUGCUCCUUGCCAUCGUAUUCGACGACAACAGUUCCACAUCAAUGCCAAGAUGGCAGCAGUUGGCAUUUGUGUGGUUGGUUGUUUGGUU-----UUUAGGUUGGCAGAUC .((((((((.(((((((....))).((((((....((((((.((((((((..((....)).)))))))).))))))...)))))))))).-----...)))..)))))... ( -38.60) >DroEre_CAF1 55494 95 - 1 GCUGCUUUUUGCCAUCGUUUUCGACGACAACAGUUCCACAUCAAUGCCAAGAUGGCAGCAGUUGGCAUUUGUGUGGUUGGCUGUUUGGUUUGGUU---------------- ...(((....(((((((((...))))).((((((.((((((.((((((((..((....)).)))))))).))))))...))))))))))..))).---------------- ( -33.20) >DroYak_CAF1 52297 111 - 1 GCUGCUUUUUGCCAUCGUAUUCGACGACAACAGUUCCACAUCAAUGCCAAGAUGGCAGCAGUUGGCAUUUGUGUGGUUGGUUGUUUGGUUUGGUUUUUAGGUUGGCAGAGC .(((((....(((.(((....))).((((((....((((((.((((((((..((....)).)))))))).))))))...))))))..............))).)))))... ( -38.30) >consensus GCUGCUUUUUGCCAUCGUAUUCGACGACAACAGUUCCACAUCAAUGCCAAGAUGGCAGCAGUUGGCAUUUGUGUGGUUGGUUGUUUGGUUUGGUUUUUAGGUUGGCAGA_C ..........(((((((....))).((((((....((((((.((((((((..((....)).)))))))).))))))...))))))))))...................... (-29.53 = -29.87 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:17 2006