Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,377,637 – 12,377,730 |
Length | 93 |
Max. P | 0.964134 |
Location | 12,377,637 – 12,377,730 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 76.53 |
Mean single sequence MFE | -36.80 |
Consensus MFE | -25.23 |
Energy contribution | -24.84 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.15 |
Mean z-score | -1.96 |
Structure conservation index | 0.69 |
SVM decision value | 1.56 |
SVM RNA-class probability | 0.964134 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12377637 93 + 27905053 AGCCAGGAGUCGCAGGACCGCCCGGCGUUGCCGGUGCACCUGGCACGAAGGUGAGUU--UUUGCCGGUGAUUCACCGAAAAUAACGUACAUGAGA .((((((.(((....))).(((((((...))))).)).))))))......(((.(((--.((..(((((...)))))..)).))).)))...... ( -36.10) >DroPse_CAF1 43077 71 + 1 AGCCGGGCCCCGCCGGACCGCCUGGCGUGUCCGGUGCACCUGGCACGAAGGUGAGU---------AGUGAUUCACCGAAA--------------- .((((((...(((((((((((...))).))))))))..)))))).....(((((((---------....)))))))....--------------- ( -39.10) >DroEre_CAF1 46663 93 + 1 AGCCAGGAGUCGCAGGACCGCCCGGCGUGGCCGGUGCACCUGGCACGAAGGUGAGUU--UUUGCCGGUGAUUCACCGAAAAUGACGCAGAGGAGA .((((((.(((....))).(((((((...))))).)).))))))((....))...((--((((((((((...)))))........)))))))... ( -36.10) >DroYak_CAF1 43293 93 + 1 AGCCAGGAGUCGCAGGACCGCCCGGCGUGGCCGGUGCACCUGGCACGAAGGUGAGUU--UCUGCCGGUGAUUCACCGAAAAUGACGUACACGAGA .((((((.(((....))).(((((((...))))).)).)))))).....((((((((--.(.....).))))))))........((....))... ( -36.90) >DroAna_CAF1 27703 83 + 1 AGCCGGGACCAGCCGGACCGCCCGGAGUGGCGGGCGCACCUGGCACGAAGGUGAGUGAGUCUG-CGGUGAUUCAGCGAAAAUCC----------- .(((((((((((((((..((((((......))))))...)))))((....))...)).)))).-))))................----------- ( -32.40) >DroPer_CAF1 40180 71 + 1 AGCCGGGGCCCGCCGGACCGCCUGGCGUGUCCGGUGCACCUGGCACGAAGGUGAGU---------AGUGAUUCACCGAAA--------------- .((((((...(((((((((((...))).))))))))..)))))).....(((((((---------....)))))))....--------------- ( -40.20) >consensus AGCCAGGACCCGCAGGACCGCCCGGCGUGGCCGGUGCACCUGGCACGAAGGUGAGUU__U_UG_CGGUGAUUCACCGAAAAU_A___________ .((((((..(.....)...((((((.....)))).)).)))))).....(((((((.............)))))))................... (-25.23 = -24.84 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:14 2006