| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,377,290 – 12,377,391 |
| Length | 101 |
| Max. P | 0.697363 |
| Location | 12,377,290 – 12,377,391 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 85.50 |
| Mean single sequence MFE | -22.55 |
| Consensus MFE | -20.79 |
| Energy contribution | -21.18 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.697363 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12377290 101 - 27905053 ACCUUCAGCUUUAUGACUGUGGAAGCGGAUACAUUGACGCCUGCUUCUUGCAAGUCCUUACAGCGUCAACCAUACCAAC-----CAAAACAACAA-GUUUUAAUGUA---- .......(((.((.((((..((((((((............))))))))....))))..)).)))...............-----.(((((.....-)))))......---- ( -19.50) >DroSec_CAF1 45706 101 - 1 ACCUUCAGCUGAAUGACUGUGGAAGCGGAUACAUUGACGCCUGCUUCUUGCAAGUCCUUACAGCGUCAACCAUACCAAC-----CAAAACAACAA-GUUUUAAUGUA---- .......((((((.((((..((((((((............))))))))....)))).)).))))...............-----.(((((.....-)))))......---- ( -22.50) >DroEre_CAF1 46316 101 - 1 ACCUUCAGCUGUAUGACUGUGGAAGCGGAUACAUUGACGCCUGCUUCUUGCAAGUCCUUACAGCGUCAACCAUACCAAC-----CAAAACAACAA-GUUUUAAUGUA---- .......((((((.((((..((((((((............))))))))....))))..))))))...............-----.(((((.....-)))))......---- ( -25.50) >DroWil_CAF1 5753 106 - 1 ACCUUCAGUUGUAUGACUGUGGAAGCGGAUACAUUAACGCCAGCUUCUUGCAAGUCCUUACAACAUCAACAACAACAAAUUGUUUAUAAAAUCAA-CGCAAAAUGUA---- .......((((((.((((..((((((((...........)).))))))....))))..))))))..........(((..((((............-.))))..))).---- ( -20.92) >DroYak_CAF1 42946 101 - 1 ACCUUCAGCUGUAUGACUGUGGAAGCGGAUACAUUGACGCCUGCUUCUUGCAAGUCCUUACAGCGUCAAGCAUACCAAC-----CAAAAGAACAA-GUUUUAAUGUA---- .......((((((.((((..((((((((............))))))))....))))..)))))).....((((...(((-----...........-)))...)))).---- ( -24.50) >DroAna_CAF1 27349 103 - 1 ACCUUCAGCUGUAUGACUGUGGAAGCGGAUACAUUGACGCCGGCUUCUUGCAAGUCCUUACAGCCCCGA---AAUAAAC-----CAAAGUAACAACGCAAUAACGUAACGU .......((((((.((((..((((((((...........)).))))))....))))..)))))).....---.......-----..........(((......)))..... ( -22.40) >consensus ACCUUCAGCUGUAUGACUGUGGAAGCGGAUACAUUGACGCCUGCUUCUUGCAAGUCCUUACAGCGUCAACCAUACCAAC_____CAAAACAACAA_GUUUUAAUGUA____ .......((((((.((((..((((((((............))))))))....))))..))))))............................................... (-20.79 = -21.18 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:12 2006