Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,376,723 – 12,376,830 |
Length | 107 |
Max. P | 0.522399 |
Location | 12,376,723 – 12,376,830 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 83.90 |
Mean single sequence MFE | -32.50 |
Consensus MFE | -21.06 |
Energy contribution | -21.78 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.04 |
Mean z-score | -2.27 |
Structure conservation index | 0.65 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522399 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12376723 107 - 27905053 -GAUUCAGCCAAGGACAACAAGUUGCAAAUAAUUUGUUGUAUGCUACGGGCUGCCAUCUCUGGGC-CAUCUGCAUUUGGCCCCUGAAAAAUGGUCUUGACCAUGCCAAC- -(((.(((((.((.(((((((((((....)))))))))))...))...)))))..)))((.((((-((........))))))..))...(((((....)))))......- ( -36.10) >DroPse_CAF1 41966 105 - 1 AGGACAAGGCAAGGACAACAAGUUGCAAAUAAUUUGUUGCAUU---UGCGCUGCCAUCUCCUGGC-CAUCUGCAUUUGCCCUUUGAGCAAUGGCCAUGACCACGACGAC- .((...(((((((..((((((((((....))))))))))..))---))).)).))...((.((((-(((.(((.((........)))))))))))).))..........- ( -32.70) >DroEre_CAF1 45727 107 - 1 -GACUCAGCCAAGGACAACAAGUUGCAAAUAAUUUGUUGUGUGCUACGGGCUGCCAUCUCUUGGC-CAUCUGCAUUUGGCCCCUGAAAAAUGGUCUUGACCAUGCCAAC- -((..(((((..(.(((((((((((....))))))))))).)......)))))...))((..(((-((........)))))...))...(((((....)))))......- ( -31.50) >DroYak_CAF1 42353 107 - 1 -GACUCAGCCAAGGACAACAAGUUGCAAAUAAUUUGUUGUAUGCUACGGGCUGCCAUCUCUGGGC-CAUCUGCAUUUGGCCCCUGAAAAAUGGUCUUGACCAUGCCAAC- -((..(((((.((.(((((((((((....)))))))))))...))...)))))...))((.((((-((........))))))..))...(((((....)))))......- ( -35.00) >DroAna_CAF1 26690 101 - 1 -----CAGCCAUGAACAACAAGUUGCAAAUAAUUUGUUGCAUA---CUGGCUGCCAUCUCUUGGC-CAUCUGCAUUUGGCCUCUGAAAAAUGGUCUUGACCAUGUCCACU -----((((((((..((((((((((....))))))))))..))---.)))))).........(((-((........)))))...((...(((((....))))).)).... ( -30.80) >DroPer_CAF1 39061 106 - 1 AGGACAAGGCAAGGACAACAAGUUGCAAAUAAUUUGUUGCAUU---UGCGCUGCCAUCUCCUGGCCCAUCUGCAUUUGCCCUUUGAGCAAUGGCCAUGACCACGACGAC- .((...(((((((..((((((((((....))))))))))..))---))).)).))...((.(((((.((.(((.((........)))))))))))).))..........- ( -28.90) >consensus _GAAUCAGCCAAGGACAACAAGUUGCAAAUAAUUUGUUGCAUG___CGGGCUGCCAUCUCUUGGC_CAUCUGCAUUUGGCCCCUGAAAAAUGGUCUUGACCAUGCCAAC_ .......((((((..((((((((((....))))))))))..........((.((((.....))))......)).)))))).........(((((....)))))....... (-21.06 = -21.78 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:11 2006