Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,373,398 – 12,373,490 |
Length | 92 |
Max. P | 0.685830 |
Location | 12,373,398 – 12,373,490 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 93.91 |
Mean single sequence MFE | -16.81 |
Consensus MFE | -14.91 |
Energy contribution | -14.94 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.06 |
Mean z-score | -1.33 |
Structure conservation index | 0.89 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685830 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12373398 92 - 27905053 AAUACUCGACUUGGCAUCGUUUACGUGCGUACAACACCACGACAACACGUACAGCAAACAACGGCUAAACAAGUUGGCAAACACCCCAGUGA .....((((((((...(((((....(((((((................)))).)))...))))).....))))))))....(((....))). ( -18.29) >DroSec_CAF1 41744 91 - 1 AAUACUCGACUUGGCAUCGUUUACGUGCGUACAACACGACGACAACACGUACAACAAACAACGGCUAAACA-GUUGGCAAACACCCCAGAGA ....(((....(((....((((((((((((........)))....)))))).)))........(((((...-.))))).......)))))). ( -15.70) >DroSim_CAF1 41086 92 - 1 AAUACUCGACUUGGCAUCGUUUACGUGCGUACAACACCACGACAACACGUACAACAAACAACGGCUAAACAAGUUGGCAAACACCCCAGAGA ....(((((((((...((((((((((((((........)))....))))))........))))).....))))))((........)).))). ( -16.90) >DroEre_CAF1 42065 92 - 1 AAUACUCGACUUGGCAUCGUUUACGUGCGUACAACACCACGACAACACGUACAACAAACAACGGCUAAACAAGUUGGCAAACACCCCAGAGA ....(((((((((...((((((((((((((........)))....))))))........))))).....))))))((........)).))). ( -16.90) >DroYak_CAF1 38537 92 - 1 AAUACUCGACUUGGCAUCGUUUACGUGCGUACAACACCACGACAACACGUACAACAAACAACGGCUAAACAAGUUGGCAAACACCCCAGAGA ....(((((((((...((((((((((((((........)))....))))))........))))).....))))))((........)).))). ( -16.90) >DroAna_CAF1 23615 87 - 1 AAUACUCGACUUGGCAUCGUUUACGUGCGUACACCACCCCGACAACACGUACAACAAACAAUGGCUAAACAAGUUGACAAUCCCCUU----- .....(((((((((((.((....)))))((((................)))).................))))))))..........----- ( -16.19) >consensus AAUACUCGACUUGGCAUCGUUUACGUGCGUACAACACCACGACAACACGUACAACAAACAACGGCUAAACAAGUUGGCAAACACCCCAGAGA .....(((((((((((.((....)))))((((................)))).................))))))))............... (-14.91 = -14.94 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:08 2006