Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,760,638 – 1,760,737 |
Length | 99 |
Max. P | 0.901218 |
Location | 1,760,638 – 1,760,737 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 78.83 |
Mean single sequence MFE | -20.28 |
Consensus MFE | -11.99 |
Energy contribution | -11.52 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.14 |
Mean z-score | -2.18 |
Structure conservation index | 0.59 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901218 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1760638 99 - 27905053 -AUUGC------AGACUGUCGC--ACAGCAGACACGCUAAAACUGUUCACU-UG-GCGAAACGUAUAAAUUUUCUAUUGAUUUAUGCCAAGUUCGCAUGCCAUUUU--UUUC -..(((------..((((((..--......))).((((((..........)-))-)))....(((((((((.......)))))))))..)))..))).........--.... ( -20.40) >DroVir_CAF1 82236 100 - 1 UUUUGGAAUGGUUUGCUGUCGUCUG----------GCUAAAACUGUUCGCUUUUGGUGAAACGUAUAAAUUUUCUAUUGAUUUAUGCCAAGUUCGCAUGCCAUUUU--UUCC ....((((((((.(((....((.(.----------(((((((........))))))).).))(((((((((.......))))))))).......))).))))))))--.... ( -24.10) >DroPse_CAF1 60084 85 - 1 --------------------------UGCAGACACGCUAAAACUGUUCACUUUU-GCGAAACGUAUAAAUUUUCUAUUGAUUUAUGCCAAGUUUGCAUGCCAUUUUUUUUUC --------------------------(((((((.(((.((((........))))-)))....(((((((((.......)))))))))...)))))))............... ( -18.20) >DroWil_CAF1 64421 90 - 1 ---------------CUGUCGC----AGCAGACACACUAAAACUGUUCUCUUUU-GUGAAACGUAUAAAUUUUCUAUUGAUUUAUGCCAAGUUCGCAUGCCAUUUU--UUCC ---------------.....((----(((..((.(((.((((........))))-)))....(((((((((.......)))))))))...))..)).)))......--.... ( -15.80) >DroAna_CAF1 64954 93 - 1 --------------ACUGUCGC--GUAGCAGACACGCUAAAACUGUUCACUUUG-GCGAAACGUAUAAAUUUUCUAUUGAUUUAUGCCAAGUUUGCAUGCCAUUUU--UUUC --------------......((--((.((((((.(((((((.........))))-)))....(((((((((.......)))))))))...))))))))))......--.... ( -25.00) >DroPer_CAF1 66614 85 - 1 --------------------------UGCAGACACGCUAAAACUGUUCACUUUU-GCGAAACGUAUAAAUUUUCUAUUGAUUUAUGCCAAGUUUGCAUGCCAUUUUUUUUUC --------------------------(((((((.(((.((((........))))-)))....(((((((((.......)))))))))...)))))))............... ( -18.20) >consensus _______________CUGUCGC____AGCAGACACGCUAAAACUGUUCACUUUU_GCGAAACGUAUAAAUUUUCUAUUGAUUUAUGCCAAGUUCGCAUGCCAUUUU__UUUC .......................................................(((((..(((((((((.......)))))))))....)))))................ (-11.99 = -11.52 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:00 2006