Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,363,112 – 12,363,207 |
Length | 95 |
Max. P | 0.589644 |
Location | 12,363,112 – 12,363,207 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 85.22 |
Mean single sequence MFE | -18.99 |
Consensus MFE | -15.56 |
Energy contribution | -15.48 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.17 |
Mean z-score | -1.53 |
Structure conservation index | 0.82 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.589644 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12363112 95 + 27905053 AGCUGCUUCCUCACACACG---CGCGCACACACACAUACACGCAUUCGCUUUAAUUAAGCAAACAUAGAGAAUGUUCAGCGUUGCGGCUAAAAAAUUC ((((((...(((......(---((.(............).)))....((((.....)))).......)))((((.....))))))))))......... ( -19.50) >DroSec_CAF1 31574 89 + 1 AGCUGCUUCCUCACACACG---CGCACGCACACACA------CAUUCGCUUUAAUUAAGCAAACAUUGAGAAUGCUCAGCGUUGCGGCUAAAAAAUUC ((((((...((((.....(---(....)).......------.....((((.....))))......))))(((((...)))))))))))......... ( -20.20) >DroSim_CAF1 30867 88 + 1 AGCUGCUUCCUCACACACG---CGCGCACACACACA------CAUUCGCUUUAAUUAAGCAAACAUUGAGAAUGCUCAGCGUUGCGGCUAAA-AAUUC ((((((............(---(((...........------.....((((.....))))......((((....)))))))).))))))...-..... ( -18.82) >DroEre_CAF1 31863 87 + 1 AGCUGUUUCCUCACACACG---CGCGCACACA--------CACAUUCGCUUUAAUUAAGCAAACAUUGAGCGUGCUCAGCGUUGCGGCUAAAAAAUUC ((((((..........(((---(..((((.(.--------((.....((((.....))))......)).).))))...)))).))))))......... ( -19.80) >DroAna_CAF1 13881 92 + 1 AGCUGCCUUCUCACAUAUAGUACACACGCCCCCA------CGCAUUCACUUUAAUUAAGCAAACAUUGGGAAUGCUCAGCGUUGCGGCUAAAAAAUUC ((((((......((.....))....((((.....------.((((((.((.................))))))))...)))).))))))......... ( -16.63) >consensus AGCUGCUUCCUCACACACG___CGCGCACACACACA____C_CAUUCGCUUUAAUUAAGCAAACAUUGAGAAUGCUCAGCGUUGCGGCUAAAAAAUUC ((((((.........................................((((.....)))).(((.(((((....))))).)))))))))......... (-15.56 = -15.48 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:00 2006