Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,360,923 – 12,361,038 |
Length | 115 |
Max. P | 0.500000 |
Location | 12,360,923 – 12,361,038 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 86.20 |
Mean single sequence MFE | -24.68 |
Consensus MFE | -21.12 |
Energy contribution | -21.16 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.40 |
Structure conservation index | 0.86 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12360923 115 + 27905053 ACGAAGCAAUCUGUUUGGGAUUCAUUUUUUGCUGGUUCCGUAAAAUUUGUUUGGCUGUCGAAGUCAAAUGAGGUUAAAAUACGGAUACCAUACUACGGGACCGAUUGCGGGACCG ....(((((...(..((.....))..).)))))((((((((((..((..(((((((.....)))))))..)).........(((...((.......))..))).)))))))))). ( -34.00) >DroSec_CAF1 29546 90 + 1 ACGAAGCAAUCAGUUUGGGAUUCAUUUUUUGCUGGUUCCGUAAGAUUUGUUUGGCUGUCGAAGUCAAAUGAGGUUAAGAUACAGAUACCA------------------------- .....(.(((((((..((((....))))..))))))).).......(..(((((((.....)))))))..)(((............))).------------------------- ( -17.50) >DroSim_CAF1 28855 90 + 1 ACGAAGCAAUCUGUUUGGGAUUCAUUUUUUGCUGGUUCCGUAAGAUUUGUUUGGCUGUCGAAGUCAAAUGAGGUUAAGAUACGGAUACCA------------------------- ....(((((...(..((.....))..).)))))(((((((((...((..(((((((.....)))))))..)).......)))))).))).------------------------- ( -23.40) >DroEre_CAF1 29750 90 + 1 ACGAAGCAAUCUGUUUGGUAUUCAUUUUUUGCUGGUUCCGUAAGAUUUGUUUGGCUGUCGAAGUCAAAUGAGUUUAAAAUACGGAUACCA------------------------- ((.((((.....)))).))..............((((((((((((((..(((((((.....)))))))..)))))....)))))).))).------------------------- ( -27.10) >DroYak_CAF1 26018 90 + 1 ACAAAGCUAUCUGUUUGGGAUUCAUUUUUUGCUGGUUCCGUAAGAUUUGUUUGGCUGUCGAAGUCAAAUGGGGUUAAAAUACGGAUACCA------------------------- ....(((.((((.....)))).........)))(((((((((...((..(((((((.....)))))))..)).......)))))).))).------------------------- ( -21.40) >consensus ACGAAGCAAUCUGUUUGGGAUUCAUUUUUUGCUGGUUCCGUAAGAUUUGUUUGGCUGUCGAAGUCAAAUGAGGUUAAAAUACGGAUACCA_________________________ .(.((((.....)))).)..............((((((((((...((..(((((((.....)))))))..)).......)))))).))))......................... (-21.12 = -21.16 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:59 2006