Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,359,860 – 12,359,954 |
Length | 94 |
Max. P | 0.987334 |
Location | 12,359,860 – 12,359,954 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 92.81 |
Mean single sequence MFE | -22.03 |
Consensus MFE | -21.63 |
Energy contribution | -21.97 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.55 |
Structure conservation index | 0.98 |
SVM decision value | 2.08 |
SVM RNA-class probability | 0.987334 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12359860 94 - 27905053 AUGGGCUUUACUUUCGGAUGCAGCCUCAGCAACCGACUCAUCUGACUUAUACAACUCAUCCCGGCCAUGCCGCCAUACC--------GCCACAAUAAAAUCC .(((((.......((((.(((.......))).))))..........................(((......))).....--------))).))......... ( -18.30) >DroSec_CAF1 28498 102 - 1 UUGGGCUUUACUUUCGGAUGCAGCCUCAGCAUCCGACUCAUCUGACUUAUACAACUCAUCCCGGCAAUGCCGCCAUACCGCCAUAUCGCCACAAUAAAAUCC ((((((.......((((((((.......))))))))..........................(((......))).............))).)))........ ( -23.90) >DroSim_CAF1 27814 102 - 1 UUGGGCUUUACUUUCGGAUGCAGCCUCAGCAUCCGACUCAUCUGACUUAUACAACUCAUCCCGGCAAUGCCGCCAUACCGCCAUAUCGCCACAAUAAAAUCC ((((((.......((((((((.......))))))))..........................(((......))).............))).)))........ ( -23.90) >consensus UUGGGCUUUACUUUCGGAUGCAGCCUCAGCAUCCGACUCAUCUGACUUAUACAACUCAUCCCGGCAAUGCCGCCAUACCGCCAUAUCGCCACAAUAAAAUCC .(((((.......((((((((.......))))))))..........................(((......))).............))).))......... (-21.63 = -21.97 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:58 2006