Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,351,340 – 12,351,433 |
Length | 93 |
Max. P | 0.500000 |
Location | 12,351,340 – 12,351,433 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 89.76 |
Mean single sequence MFE | -30.97 |
Consensus MFE | -23.27 |
Energy contribution | -24.07 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.50 |
Structure conservation index | 0.75 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12351340 93 + 27905053 GACUUAAGACUCUCCGAUGCGGCUCAGCAUCGUCAUUGGUCGGGAAGUGCA------ACUGCAUCUGC------AUCUGCAUCUCUAUUGCUGCUUUGCAGGCAU .((((..((((...((((((......)))))).....))))...))))((.------.(((((...((------(...(((.......))))))..))))))).. ( -28.80) >DroSec_CAF1 20164 87 + 1 GACUUAAGACUCUGCGAUGCGGCUCAGCAUCGUCAUUGGUCGGGAAGUGCA------ACUGCAUC------------UGCAUCUCUAUUGCUGCUUUGCAGGCAU .((((..((((..(((((((......)))))))....))))...))))((.------.(((((..------------.(((.(......).)))..))))))).. ( -29.40) >DroSim_CAF1 19274 93 + 1 GACUUAAGACUCUGCGAUGCGGCUCAGCAUCGUCAUUGGUCGGGAAGUGCA------ACUGCAUCUGC------AUCUGCAUCUCUAUUGCUGCUUUGCAGGCAU .((((..((((..(((((((......)))))))....))))...))))((.------.(((((...((------(...(((.......))))))..))))))).. ( -30.90) >DroEre_CAF1 20039 99 + 1 GACUUAAGACUCUGCGAUGCGGCUCAGCAUCGUCAUUGGUGGGGAACUGCA------ACUGCAUCUGCAUCGGCGUCUGCAUCUCUAUUGCUGCUUUGCAGGCAU .............(((((((......)))))))..((((((.(((..(((.------...)))))).)))))).(((((((...............))))))).. ( -30.96) >DroYak_CAF1 16275 105 + 1 GACUUAAGACUCUGCGAUGCGGCUCAGCAUCGUCAUUGGUCGGGAACUGCAACUGCAACUGCAUCUGCAUCUGCAUCUGCAUCUCUAUUGCUGCUUUGCAGGCAU .......((((..(((((((......)))))))....))))((((..((((..((((..(((....)))..))))..))))))))...((((((...))).))). ( -34.80) >consensus GACUUAAGACUCUGCGAUGCGGCUCAGCAUCGUCAUUGGUCGGGAAGUGCA______ACUGCAUCUGC______AUCUGCAUCUCUAUUGCUGCUUUGCAGGCAU .......((((..(((((((......)))))))....)))).(((..((((.........((....)).........))))..)))..((((((...))).))). (-23.27 = -24.07 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:55 2006