| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,350,047 – 12,350,143 |
| Length | 96 |
| Max. P | 0.594147 |
| Location | 12,350,047 – 12,350,143 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 69.81 |
| Mean single sequence MFE | -19.09 |
| Consensus MFE | -9.79 |
| Energy contribution | -10.32 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.594147 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12350047 96 + 27905053 ---UU---GUGAUUUGUUUUGAAUUAAGCUGUUUUAUAG-UAAAAA------AAA-ACUAUUUUUUUUUUCGAGUGCAGCAUUUUCUAUGCUCCACUUGACGGAGACAUU ---..---.((((((.....))))))...((((((((((-(.....------...-)))))........(((((((.(((((.....))))).)))))))..)))))).. ( -20.80) >DroSec_CAF1 18880 104 + 1 UCAUA---GUGAUUUGUUUUGAAUGCAGCUGUUUUAUUU-UACAAAUAACAAAAA-ACAAUUU-UUUUUCCGAGUGCAGCAUUUUCUAUGCUCCACUUGACGGAGACAUU .....---((.((((((..((((.((....))))))...-.)))))).)).....-.......-..((((((((((.(((((.....))))).))))...)))))).... ( -21.00) >DroSim_CAF1 18037 88 + 1 UCAUA---GUGAUUUGUUUUUAAUUCAGCUGUUUUAUUG-UACAAA------------------UUUUUCCGAGUGCAGCAUUUUCUAUGCUCCACUUGACGGAGACAUU .....---..(((((((...(((..(....)..)))...-.)))))------------------))((((((((((.(((((.....))))).))))...)))))).... ( -19.70) >DroEre_CAF1 18750 107 + 1 UCGUAAUUGUAGUUCGUUCUGAAGAAAACUGUUUUACAA-UACAAAUAAUAAAACUACCAUUU-UUUCUCCGAGUGCUGCAUU-UCUAUGCUCCACUUGACGGAGACAUU ..(((.((((((..(((((....)))...))..))))))-)))....................-..((((((((((..((((.-...))))..))))...)))))).... ( -23.50) >DroYak_CAF1 14954 108 + 1 UCAUAAUUGUAAUCCGAUUGGAAUUAAACUGUUUUACAA-UAAAAAUAAUAAAAGUAGCAUUU-UUUCUCCGAGUGCUGCAUUUUCUAUGCUCCACUUGACGGAGACAUU .....(((((((..((.((.......)).))..))))))-)......................-..((((((((((..((((.....))))..))))...)))))).... ( -22.30) >DroAna_CAF1 2419 102 + 1 UUAUAAUUCUGG----UUUUGGUUUAA-AUAUUUAAUGCAUCCCUGAAAUA-AACCCCUAUUU-UCUCUCUCUGUGGU-CAAUCUCUAUGCUCCACUUGACAACGUCUUU ..........((----(((...((((.-................))))..)-)))).......-....((...((((.-((.......))..))))..)).......... ( -7.23) >consensus UCAUA___GUGAUUUGUUUUGAAUUAAGCUGUUUUAUAA_UACAAAUAAUA_AAA_ACCAUUU_UUUCUCCGAGUGCAGCAUUUUCUAUGCUCCACUUGACGGAGACAUU ..................................................................((((((((((..((((.....))))..))))...)))))).... ( -9.79 = -10.32 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:54 2006