Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,760,129 – 1,760,224 |
Length | 95 |
Max. P | 0.697158 |
Location | 1,760,129 – 1,760,224 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 75.00 |
Mean single sequence MFE | -29.82 |
Consensus MFE | -13.33 |
Energy contribution | -14.00 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.18 |
Mean z-score | -1.97 |
Structure conservation index | 0.45 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.697158 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1760129 95 - 27905053 CUUGCGUAACAGCAGUUACAGCGGCUACAGCUCCAGCGGCUGCUGC--AUCCAGUGGCAUGAAUUGCGAUGAUGGAGUUAUCCAUUUAUACUCGCAU ..((((((((....))))).(((((....((....))....)))))--........))).....(((((.((((((....)))))).....))))). ( -30.20) >DroVir_CAF1 81851 89 - 1 GUUGCAACACA--AGCA---G---CAGCAGCAGCAGUGGCCAUGGCCAUGGCAGUGGCAUGAAUUGCGAUGAUGGAGUUAUCCAUUUAUACUCGCAU (((((......--.)))---)---).((.((.((.(((((....))))).)).)).))......(((((.((((((....)))))).....))))). ( -32.90) >DroGri_CAF1 70594 92 - 1 GCUGCACCACA--GGCAACUG---UAACAGCAGUCGUGGCCAUGGCACUGGCAGUGGCAUGAAUUGCGAUGAUGGAGCUAUCCAUUUAUACUCACAU ((((....(((--(....)))---)..)))).((((..(.((((.(((.....))).))))..)..))))((((((....))))))........... ( -32.10) >DroEre_CAF1 67805 89 - 1 GUUUCGUUACAGCAGUUACAGCAGUUAC------AGCGGCUGCAGC--AGCCAGUGGCAUGAAUUGCGAUGAUGGAGUUAUCCAUUUAUACUCGCAU .....(((((.((.((.((....)).))------.))(((((...)--)))).)))))......(((((.((((((....)))))).....))))). ( -27.00) >DroYak_CAF1 68514 95 - 1 GUUGCGUUACAGCAGUUACAGCGGCUACAGCUUCAGCGGCUGCUGC--AGCCAGUGGCAUGAAUUGCGAUGAUGGAGUUAUCCAUUUAUACUCGCAU ..((((.....((((((.((...(((((.((....))(((((...)--)))).))))).))))))))...((((((....))))))......)))). ( -34.20) >DroAna_CAF1 64450 80 - 1 GUUGCGUUACAGCAGUUACGGCAGCUAC---------------ACC--GGCUAGUGGCAUGAAUUGCGAUGAUGGAGUUAUCCAUUUAUACUCGCAU ..(((......)))(((((...((((..---------------...--)))).)))))......(((((.((((((....)))))).....))))). ( -22.50) >consensus GUUGCGUUACAGCAGUUACAGC_GCUACAGC__CAGCGGCUGCAGC__AGCCAGUGGCAUGAAUUGCGAUGAUGGAGUUAUCCAUUUAUACUCGCAU ......................................(((((.(......).)))))......(((((.((((((....)))))).....))))). (-13.33 = -14.00 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:59 2006