Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 306,870 – 306,990 |
Length | 120 |
Max. P | 0.983364 |
Location | 306,870 – 306,990 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.25 |
Mean single sequence MFE | -46.46 |
Consensus MFE | -40.30 |
Energy contribution | -40.30 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.11 |
Mean z-score | -1.88 |
Structure conservation index | 0.87 |
SVM decision value | 1.94 |
SVM RNA-class probability | 0.983364 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 306870 120 + 27905053 AAGCGGCAUCUUCCAAAGGACGUCGAAGUGGAUCGGAGGCGUCGUCAGUACCAGAAGAUUAACUUGGUGAAUGAGCUGGCCAAGGCGGGCCUCACUGACGACGUGCUGCAGCCCACCGAG ...((((.(((......))).))))..((((.((((..((((((((((((((((.........))))))..((((((.((....)).)).)))))))))))))).))).)..)))).... ( -45.30) >DroSec_CAF1 43272 120 + 1 AAGCGGCAUCUUCCAAAGGACGUCGAAGUGGAUCGGAGGCGUCGUCAGUACCAGAAGAUUAACUUGGUGAACGAGCUGGCCAAGGCGGGCCUCACUGACGACGUGCUGCAGCCCACCGAG ...((((.(((......))).))))..((((.((((..((((((((((((((((.........)))))....(((((.((....)).)).)))))))))))))).))).)..)))).... ( -45.40) >DroSim_CAF1 44119 120 + 1 AAGCGGCAUCUUCCAAAGGACGUCGAAGUGGAUCGGAGGCGUCGUCAGUACCAGAAGAUUAACUUGGUGAACGAGCUGGCCAAGGCGGGCCUCACUGACGACGUGCUGCAGCCCACCGAG ...((((.(((......))).))))..((((.((((..((((((((((((((((.........)))))....(((((.((....)).)).)))))))))))))).))).)..)))).... ( -45.40) >DroEre_CAF1 46192 120 + 1 AAGCGGCAUCUUCCCAAGGACGUCGAGGUGGACCGGAGGCGUCGUCAGUACCAGAAGAUCAACCUAGAGAAGGAGCUGGCCAGGGCAGGACUCACUGACGACGUGCUCCAGCCCACCGAA ...((((.(((......))).)))).(((((.(.(((((((((((((((.........((......))....(((((.((....)).)).)))))))))))))).)))).).)))))... ( -49.20) >DroYak_CAF1 46008 120 + 1 AAGCGUCAUCUUCCAAAGGACGUUGAAGUGGACCGGAGGCGUCGUCAGUACCAGAAGAUCAACCUAGUAAAAGAGCUUGCCAAGGCGGGACUUACUGACGACGUCCUCCAGCCCACCGAG .((((((...........))))))...((((.(.(((((((((((((((......((......)).......((((((((....))))).))))))))))))).))))).).)))).... ( -47.00) >consensus AAGCGGCAUCUUCCAAAGGACGUCGAAGUGGAUCGGAGGCGUCGUCAGUACCAGAAGAUUAACUUGGUGAACGAGCUGGCCAAGGCGGGCCUCACUGACGACGUGCUGCAGCCCACCGAG ...((((.(((......))).))))..((((.(.(.((((((((((((((((((.........)))))....(((((.((....)).)).)))))))))))))).)).).).)))).... (-40.30 = -40.30 + 0.00)
Location | 306,870 – 306,990 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.25 |
Mean single sequence MFE | -45.32 |
Consensus MFE | -33.72 |
Energy contribution | -33.72 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.11 |
Mean z-score | -1.68 |
Structure conservation index | 0.74 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 306870 120 - 27905053 CUCGGUGGGCUGCAGCACGUCGUCAGUGAGGCCCGCCUUGGCCAGCUCAUUCACCAAGUUAAUCUUCUGGUACUGACGACGCCUCCGAUCCACUUCGACGUCCUUUGGAAGAUGCCGCUU .((((.((((....)).((((((((((..((((......)))).........((((((.....))..)))))))))))))))).)))).......((.((((........)))).))... ( -39.80) >DroSec_CAF1 43272 120 - 1 CUCGGUGGGCUGCAGCACGUCGUCAGUGAGGCCCGCCUUGGCCAGCUCGUUCACCAAGUUAAUCUUCUGGUACUGACGACGCCUCCGAUCCACUUCGACGUCCUUUGGAAGAUGCCGCUU .((((.((((....)).((((((((((..((((......)))).........((((((.....))..)))))))))))))))).)))).......((.((((........)))).))... ( -39.80) >DroSim_CAF1 44119 120 - 1 CUCGGUGGGCUGCAGCACGUCGUCAGUGAGGCCCGCCUUGGCCAGCUCGUUCACCAAGUUAAUCUUCUGGUACUGACGACGCCUCCGAUCCACUUCGACGUCCUUUGGAAGAUGCCGCUU .((((.((((....)).((((((((((..((((......)))).........((((((.....))..)))))))))))))))).)))).......((.((((........)))).))... ( -39.80) >DroEre_CAF1 46192 120 - 1 UUCGGUGGGCUGGAGCACGUCGUCAGUGAGUCCUGCCCUGGCCAGCUCCUUCUCUAGGUUGAUCUUCUGGUACUGACGACGCCUCCGGUCCACCUCGACGUCCUUGGGAAGAUGCCGCUU ...((((((((((((..((((((((((((((...((....))..)))).....(((((.......))))).)))))))))).)))))))))))).((.((((........)))).))... ( -52.90) >DroYak_CAF1 46008 120 - 1 CUCGGUGGGCUGGAGGACGUCGUCAGUAAGUCCCGCCUUGGCAAGCUCUUUUACUAGGUUGAUCUUCUGGUACUGACGACGCCUCCGGUCCACUUCAACGUCCUUUGGAAGAUGACGCUU ...(((((((((((((.((((((((((.......((....))..........((((((.......)))))))))))))))))))))))))))))....((((.((.....)).))))... ( -54.30) >consensus CUCGGUGGGCUGCAGCACGUCGUCAGUGAGGCCCGCCUUGGCCAGCUCGUUCACCAAGUUAAUCUUCUGGUACUGACGACGCCUCCGAUCCACUUCGACGUCCUUUGGAAGAUGCCGCUU ...((((((.((.((..(((((((((((.((((......))))..........(((((.....))..)))))))))))))).)).)).)))))).((.((((........)))).))... (-33.72 = -33.72 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:17 2006