Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,348,788 – 12,348,878 |
Length | 90 |
Max. P | 0.544832 |
Location | 12,348,788 – 12,348,878 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.20 |
Mean single sequence MFE | -31.45 |
Consensus MFE | -21.89 |
Energy contribution | -22.14 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.16 |
Mean z-score | -1.70 |
Structure conservation index | 0.70 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544832 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12348788 90 + 27905053 AC---CGCAUCCGCGGC---CUCU------------GCCGCACAAUUGGAGCGCUUCCAAAGCGUUCCUAAAUCUAAUCAAAGUGCGCCUGGCUUGUCGUCGCAGUUG------------ .(---(((....)))).---..((------------(((((((....((((((((.....))))))))((....))......)))))...(((.....)))))))...------------ ( -29.50) >DroSec_CAF1 17547 90 + 1 AC---CGCAUCCGCGGC---CUCU------------GCCGCACAAUUGGAGCGCUUCCAAAGCGUUCCUAAAUCUAAUCAAAGUGCGCCUGGCUUGUCGUCGCAGUUG------------ .(---(((....)))).---..((------------(((((((....((((((((.....))))))))((....))......)))))...(((.....)))))))...------------ ( -29.50) >DroSim_CAF1 16715 90 + 1 AC---CGCAUCCGCGGC---CUCU------------GCCGCACAAUUGGAGCGCUUCCAAAGCGUUCCUAAAUCUAAUCAAAGUGCGCCUGGCUUGUCGUCGCAGUUG------------ .(---(((....)))).---..((------------(((((((....((((((((.....))))))))((....))......)))))...(((.....)))))))...------------ ( -29.50) >DroEre_CAF1 17447 90 + 1 AC---CGCAUCCGCGGC---CUCU------------GCCGCACAAUUGGAGCGCUUCCAAAGCGUUCCUAAAUCUAAUCAAAGUGCGCCUGGCUUGUCGUCGCAGUUG------------ .(---(((....)))).---..((------------(((((((....((((((((.....))))))))((....))......)))))...(((.....)))))))...------------ ( -29.50) >DroYak_CAF1 13611 97 + 1 AC---CGCAUCCGCGGC---CUCU------------GCCGCACAAUUGGAGCGCUUCCAAAGCGUUCCUAAAUCUAAUCAAAGUGCG-----AUUGUCGUCGCAGUUGCUGUUGCUUUUG ..---.(((...(((((---....------------)))))(((...((((((((.....))))))))................(((-----(((((....))))))))))))))..... ( -33.40) >DroAna_CAF1 1338 108 + 1 GCGGCGGCAUCCGCGGCAGUCUCUUCUGUCUCUCCAGUCGCACAAUUGGAGCGGUUCCAGAGCGUCGCUAAAUCUAAUCAAAAUGCGACUCGUUUGCCGUCCAUGUUG------------ (.(((((((.(((((((((......)))))..((((((......)))))))))).......(.(((((................))))).)...))))))))......------------ ( -37.29) >consensus AC___CGCAUCCGCGGC___CUCU____________GCCGCACAAUUGGAGCGCUUCCAAAGCGUUCCUAAAUCUAAUCAAAGUGCGCCUGGCUUGUCGUCGCAGUUG____________ .....(((((..(((((...................)))))......(((((((((...)))))))))..............)))))................................. (-21.89 = -22.14 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:53 2006