Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,347,937 – 12,348,031 |
Length | 94 |
Max. P | 0.909835 |
Location | 12,347,937 – 12,348,031 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 75.67 |
Mean single sequence MFE | -28.62 |
Consensus MFE | -19.63 |
Energy contribution | -19.88 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.17 |
Mean z-score | -1.53 |
Structure conservation index | 0.69 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.909835 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12347937 94 + 27905053 CAAUAACCAUUUCAAUGCU---ACUGUGCGUGAUGGCUGGGGCAUGAGUAAUUGGCCAUCGGCAAAGGGAUGGGGAU------GGCAAUGGC------AAUGGGAAUGG---------- ......(((((((..((((---(((.(((.(((((((..(.((....))..)..)))))))))).))...((.....------..)).))))------)...)))))))---------- ( -29.70) >DroPse_CAF1 17748 86 + 1 CAAUAACCAUUUCAAUGCUACUACUGUGCGUGAUGCAAGAGGCAUGAGUAAUUGACUAUC----AAGGGAGAGGGAGAGC-G------------------UGAGAGAGG---------- ......((.((((.(((((.((.((.(.(.((((((((...((....))..))).).)))----)..).).))..)))))-)------------------)..))))))---------- ( -17.70) >DroSec_CAF1 16692 106 + 1 CAAUAACCAUUUCAAUGCU---ACUGUGCGUGAUGGCUGGGGCAUGAGUAAUUGGCCAUCGGCAAAGGGAUGGGGAUGUGGAUGGCAAUGGCAAUGGGAAUGGGAAUGG---------- ......(((((((..((((---(((.(((.(((((((..(.((....))..)..)))))))))).)).........(((.....))).)))))...)))))))......---------- ( -32.70) >DroSim_CAF1 15850 106 + 1 CAAUAACCAUUUCAAUGCU---ACUGUGCGUGAUGGCUGGGGCAUGAGUAAUUGGCCAUCGGCAAAGGGAUGGGGAUGUGGAUGGCAAUGGCAAUGGGAAUGGGAAUGG---------- ......(((((((..((((---(((.(((.(((((((..(.((....))..)..)))))))))).)).........(((.....))).)))))...)))))))......---------- ( -32.70) >DroEre_CAF1 16605 88 + 1 CAAUAACCAUUUCAAUGCU---ACUGUGCGUGAUGGCUGGGGCAUGAGUAAUUGGCCAUUGGCAAAGGGAUGGGGUUGGCAGUGGGAAUGG---------------------------- ......((((((((((.((---(((.(((.(((((((..(.((....))..)..))))))))))...)).))).))))).)))))......---------------------------- ( -27.60) >DroYak_CAF1 12735 116 + 1 CAAUAACCAUUUCAAUGCU---ACUGUGCGUGAUGGCUGGGGCAUGAGUAAUUGGCCAUCGGCAAAGGGAUGGGGUUGGCAAUGGGAAUGGAAAUGGAAAUGGGACGGGGGCUCUGGGC ......((((((((((.((---(((.(((.(((((((..(.((....))..)..))))))))))...)).))).))))).)))))....................(((.....)))... ( -31.30) >consensus CAAUAACCAUUUCAAUGCU___ACUGUGCGUGAUGGCUGGGGCAUGAGUAAUUGGCCAUCGGCAAAGGGAUGGGGAUGGC_AUGGCAAUGGC______AAUGGGAAUGG__________ ......((((..(.((((.........))))((((((..(.((....))..)..))))))......)..)))).............................................. (-19.63 = -19.88 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:52 2006