Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,344,971 – 12,345,072 |
Length | 101 |
Max. P | 0.953295 |
Location | 12,344,971 – 12,345,072 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 94.08 |
Mean single sequence MFE | -19.66 |
Consensus MFE | -16.28 |
Energy contribution | -17.04 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.07 |
Mean z-score | -1.93 |
Structure conservation index | 0.83 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.953295 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12344971 101 + 27905053 UAAAUGCCCAAGAAGCAUUUCAUGCUGACACAAUUUAUCAAAGUAAAAAUUCACUUCAGUUCUGGAUUAUCCCCAUAUAAAUUUUAUGGCUUUUAAGGCCG----- .....(((..((((((..((((.(((((...(((((..........)))))....)))))..)))).......((((.......))))))))))..)))..----- ( -17.10) >DroSec_CAF1 13766 101 + 1 UAAAUGCCCAAGAAGCAUUCCAAGCUGACACAAUUUAUCAAAGUAAAAAUUGACUUCAGUUGUGGAUUAUCCCCAUAUAAAUUUUAUGGCUUUUAAGGCCG----- .....(((..((((((..((((((((((..((((((..........))))))...)))))).)))).......((((.......))))))))))..)))..----- ( -24.10) >DroSim_CAF1 12892 101 + 1 UAAAUGCCCAAGAAGCAUUCCAAGCUGACACAAUUUAUCAAAGUAAAAAUUCACUUCAGUUCUGGAUUAUCCCCAUAUAAAUUUUAUGGCUUUUAAGGCCG----- .....(((..((((((..((((((((((...(((((..........)))))....)))))).)))).......((((.......))))))))))..)))..----- ( -20.90) >DroEre_CAF1 13701 101 + 1 UAAAUGCCCAAGCAGCUUUCCAAGCUGACACAAUUUAUCAAAGUAAAAAUUCACUUCAGUUCUGACUUAUCCCCAUAUAAAUUUUAUGGCUUUUAAAGCCG----- ....(((....)))(((((.((((((((...(((((..........)))))....)))))).))........(((((.......))))).....)))))..----- ( -12.70) >DroYak_CAF1 9702 106 + 1 UAAAUGCCCAAGAAGCUUUCCAGGCUGACACAAUUUAUCAAAGUAAAAAUUCACUUCAGUUCUGGAUUAUCCCCAUAUAAAUUUUAUGGCUUUUAAGGCCGAAAGA .....(((..((((((..((((((((((...(((((..........)))))....)))).)))))).......((((.......))))))))))..)))(....). ( -23.50) >consensus UAAAUGCCCAAGAAGCAUUCCAAGCUGACACAAUUUAUCAAAGUAAAAAUUCACUUCAGUUCUGGAUUAUCCCCAUAUAAAUUUUAUGGCUUUUAAGGCCG_____ .....(((..((((((..((((((((((...(((((..........)))))....)))))).)))).......((((.......))))))))))..)))....... (-16.28 = -17.04 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:44 2006