Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,342,376 – 12,342,515 |
Length | 139 |
Max. P | 0.588712 |
Location | 12,342,376 – 12,342,475 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 97.98 |
Mean single sequence MFE | -31.32 |
Consensus MFE | -29.44 |
Energy contribution | -29.77 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.64 |
Structure conservation index | 0.94 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588712 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12342376 99 - 27905053 ACCUCGCCACCAGCACCACCAUCACGAGGAACCCGGAACCUGGAACUCGAUACUCAUCCCCUUGAAAGCGAAUGAUGCAACAGCAGUUUCGGGAAUGGG .(((((..................)))))..((((...(((((((((((....(((......)))...)))....(((....)))))))))))..)))) ( -26.97) >DroSec_CAF1 11160 99 - 1 ACCUCGCCACCAGCAGCAGCAUCACGAGGAACCCGGAACCUGGAACUCGAUACUCAUCCCCUUGAAAGCGGAUGAUGCAACAGCAGUUUCGGGAAUGGG .(((((......((....))....)))))..((((...((((((((.......((((((.((....)).))))))(((....)))))))))))..)))) ( -33.50) >DroSim_CAF1 10279 99 - 1 ACCUCGCCACCAGCACCAGCAUCACGAGGAACCCGGAACCUGGAACUCGAUACUCAUCCCCUUGAAAGCGGAUGAUGCAACAGCAGUUUCGGGAAUGGG .(((((......((....))....)))))..((((...((((((((.......((((((.((....)).))))))(((....)))))))))))..)))) ( -33.50) >consensus ACCUCGCCACCAGCACCAGCAUCACGAGGAACCCGGAACCUGGAACUCGAUACUCAUCCCCUUGAAAGCGGAUGAUGCAACAGCAGUUUCGGGAAUGGG .(((((..................)))))..((((...((((((((.......((((((.((....)).))))))(((....)))))))))))..)))) (-29.44 = -29.77 + 0.33)
Location | 12,342,416 – 12,342,515 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 98.65 |
Mean single sequence MFE | -20.67 |
Consensus MFE | -19.96 |
Energy contribution | -20.30 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.42 |
Structure conservation index | 0.97 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12342416 99 - 27905053 CCCGUGUAUCGUUACCUAAACUCGGAUGCUUCAACCCUUAACCUCGCCACCAGCACCACCAUCACGAGGAACCCGGAACCUGGAACUCGAUACUCAUCC ...(.((((((...((.....((((.((...))........(((((..................)))))...)))).....))....)))))).).... ( -17.27) >DroSec_CAF1 11200 99 - 1 CCCGUGUAUCGUUACCUAAACUCGGAUGCUUCAACCCUUAACCUCGCCACCAGCAGCAGCAUCACGAGGAACCCGGAACCUGGAACUCGAUACUCAUCC ...(.((((((.........((((((((((.(.......................).)))))).))))....((((...))))....)))))).).... ( -22.60) >DroSim_CAF1 10319 99 - 1 CCCGUGUAUCGUUACCUAAACUCGGAUGCUUCAACCCUUAACCUCGCCACCAGCACCAGCAUCACGAGGAACCCGGAACCUGGAACUCGAUACUCAUCC ...(.((((((.........((((((((((...........................)))))).))))....((((...))))....)))))).).... ( -22.13) >consensus CCCGUGUAUCGUUACCUAAACUCGGAUGCUUCAACCCUUAACCUCGCCACCAGCACCAGCAUCACGAGGAACCCGGAACCUGGAACUCGAUACUCAUCC ...(.((((((.........((((((((((...........................)))))).))))....((((...))))....)))))).).... (-19.96 = -20.30 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:35 2006