Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,342,144 – 12,342,261 |
Length | 117 |
Max. P | 0.916196 |
Location | 12,342,144 – 12,342,261 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 95.90 |
Mean single sequence MFE | -32.48 |
Consensus MFE | -25.48 |
Energy contribution | -26.72 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.03 |
Mean z-score | -2.48 |
Structure conservation index | 0.78 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.916196 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12342144 117 + 27905053 UAAAUUUAUUUCCCAGCGGAGUGUGAUUUUACUGCGGAAACUGCAGCGAAACCAGCUGAAAGUUGAGCGCUUUGCACUUCUCAUUUUUUAUGAGCAUUCUAAAUUUUAGCAUUCGAA .(((((((.......(((((((((..(((..(((((....).))))..))).((((.....)))).)))))))))....(((((.....))))).....)))))))........... ( -29.40) >DroSec_CAF1 10928 117 + 1 UAAAUUUAUUUCCCAGCGGAGUGUGAUUUUACUGCGGCAACUGCAGCGAAACCAGCUGAAAGUUGGGCGCUUUGCACAUCUCAUUUUUUAUGAGCAUUCUAAAUUUUAGCAUUCGAA .(((((((.......(((((((((..(((..(((((....).))))..)))(((((.....))))))))))))))....(((((.....))))).....)))))))........... ( -32.70) >DroSim_CAF1 10047 117 + 1 UAAAUUUAUUUCCCAGCGGAGUGUGAUUUUACUGCGGCAACUGCAGCGAAACCAGCUGAAAGUUGGACGCUUUGCACAUCUCAUUUUUUAUGAGCAUUCUAAAUUUUAGCAUUCGAA .(((((((.......(((((((((..(((..(((((....).))))..)))(((((.....))))))))))))))....(((((.....))))).....)))))))........... ( -32.20) >DroEre_CAF1 10721 117 + 1 UAAAUUCAUUUCCCAGCGGAAUGUGAUUUUACUGCGGAAACUGCAGCGAAAACAGCUCAAAGUUGGGCGCUUUGGACAUCUCAUUUUUUAUGAGAAUUCUAAAUUUUAGCAUUCGAA ((((.((((((((....)))).)))).))))(((((....).))))((((....(((((....)))))((((((((..((((((.....))))))..))))).....))).)))).. ( -33.20) >DroYak_CAF1 6719 117 + 1 UAAAUUCAUUUCCCAGCGGAGUGUGAUUUUACUGCGGAAACUGCAGCGAAACCAGCUCAAAGUUGGGCGCUUUGGACAUCUCAUUUUUUAUGAGCAUUCUAAAUUUUAGCAUUCGAA ....(((....((((((.((((.((.(((..(((((....).))))..))).))))))...)))))).((((((((...(((((.....)))))...))))).....)))....))) ( -34.90) >consensus UAAAUUUAUUUCCCAGCGGAGUGUGAUUUUACUGCGGAAACUGCAGCGAAACCAGCUGAAAGUUGGGCGCUUUGCACAUCUCAUUUUUUAUGAGCAUUCUAAAUUUUAGCAUUCGAA .(((((((.......(((((((((..(((..(((((....).))))..)))(((((.....))))))))))))))....(((((.....))))).....)))))))........... (-25.48 = -26.72 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:34 2006