Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,338,371 – 12,338,464 |
Length | 93 |
Max. P | 0.750826 |
Location | 12,338,371 – 12,338,464 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 93.56 |
Mean single sequence MFE | -23.74 |
Consensus MFE | -21.82 |
Energy contribution | -21.66 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.06 |
Mean z-score | -1.22 |
Structure conservation index | 0.92 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.750826 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12338371 93 - 27905053 CGC--------GGCAACUGAGUUCAGUUCUAAGCACCUCGCAAGACUCGGGCAACCGAAACUUUUCGCACAAAACUUUUUUCUAGCUCAAGUAGCAGUAAC .((--------.((.((((((((.((....(((....((....)).((((....))))................)))....))))))).))).)).))... ( -22.30) >DroSec_CAF1 7271 101 - 1 CGCGCAGCCACGGCAACUGAGUUCAGUUCCAAGCACCUCGCAAGACUCGGGCAACCGAAAGUUUUCGCACAAAACAUUUUUCUAGCUCAAGUAGCAGUAAC ......((.((((.(((((....))))))).(((...((....)).((((....))))..(((((.....))))).........)))...)).))...... ( -24.90) >DroSim_CAF1 6400 101 - 1 CGCGCAGCCACGGCAACUGAGUUCAGUUCCAAGCACCUCGCAAGACUCGGGCAACCGAAACUUUUCGCACAAAACUUUUUUCUAGCUCAAGUAGCAGUAAC ......((.((((.(((((....)))))))..((...((....)).((((....))))........))......................)).))...... ( -24.00) >DroEre_CAF1 6714 101 - 1 CACGCAGCCAAGGCAACUGAGUUCAGUUCCAAGCACCUCGCAAGAAUCGGGCAACCGAAACUUUUCGCACAAAACUUUUUUCUAGCUCAAGUAGCAGUAAC ...((.((...((.(((((....)))))))..((...((....)).((((....))))........))......................)).))...... ( -23.90) >DroYak_CAF1 2759 101 - 1 CUGGCAGCCAAGGCAACUGAGUUCAGUUCCAAGCACCUCGCAAGAAUCGGGCAACCGAAACUUUUCGCACAAAACUUUUUUCUAGCUCAAGUAGCAGUAAC ...((.((...((.(((((....)))))))..((...((....)).((((....))))........))......................)).))...... ( -23.60) >consensus CGCGCAGCCAAGGCAACUGAGUUCAGUUCCAAGCACCUCGCAAGACUCGGGCAACCGAAACUUUUCGCACAAAACUUUUUUCUAGCUCAAGUAGCAGUAAC ...........((.(((((....)))))))..((...((....)).((((....))))........))................(((.....)))...... (-21.82 = -21.66 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:31 2006