Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,337,625 – 12,337,736 |
Length | 111 |
Max. P | 0.865662 |
Location | 12,337,625 – 12,337,736 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 91.97 |
Mean single sequence MFE | -30.18 |
Consensus MFE | -23.76 |
Energy contribution | -24.00 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.88 |
Structure conservation index | 0.79 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.865662 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12337625 111 + 27905053 UGUUUUGGUUGUUAAGCGCGUGAUUGCGCAAUGCCAACGCACAGAAAAUACGUAAUAUUAGAUGAUUAAAUAUGUAU--GUAUGUAUGUGCGAAAGACUGGCCUGUGUGGGUG .((((((((......(((((....)))))...)))..((((((....((((((((((((.........))))).)))--))))...)))))).)))))..((((....)))). ( -31.60) >DroSec_CAF1 6473 107 + 1 UGUUUGGGUUGUUAAGCGCAUGAUUGCGCAAUGCCAACGCACAGAAAAUACGUAAUAUUAGAUGAUUAAAUAUGUAU------GUAUGUGCGAAAGACUGGCCUGUGUGGGUG .((((.(((......(((((....)))))...)))..((((((....(((((((..(((....)))....)))))))------...))))))..))))..((((....)))). ( -29.40) >DroSim_CAF1 5640 107 + 1 UGUUUUGGUUGUUAAGCGCAUGAUUGCGCAAUGCCAACGCACAGAAAAUACGUAAUAUUAGAUGAUUAAAUAUGUAU------GUAUGUGCGAAAGACUGGCCUGUGUGGGUG .((((((((......(((((....)))))...)))..((((((....(((((((..(((....)))....)))))))------...)))))).)))))..((((....)))). ( -30.30) >DroEre_CAF1 5915 107 + 1 UGUUUUGGUUGUUAAGCGCAUGAUUGCGCAAUGCCAACGCACAGAAAAUACGUAAUAUUAGAUGAUUAAAUAUGUA------UGCAUGUGCGAAAGACUCUACUGUGUGGGUG ....(((((......(((((....)))))...)))))((((((....(((((((..(((....)))....))))))------)...))))))....((((........)))). ( -28.90) >DroYak_CAF1 1951 113 + 1 UGUUUUGGUUGUUAGGCGCAUGAUUGCGCAAUGCCAACGCACAGCAAAUACGAAAUAUUAGAUGAUUAAAUAUGUACGAGUCUGCAUGUGCCAAAGACUCCACUGUGUGGGUG ....(((((......(((((....)))))...)))))(((((((..........(((((.........)))))....((((((((....))...))))))..))))))).... ( -30.70) >consensus UGUUUUGGUUGUUAAGCGCAUGAUUGCGCAAUGCCAACGCACAGAAAAUACGUAAUAUUAGAUGAUUAAAUAUGUAU_____UGUAUGUGCGAAAGACUGGCCUGUGUGGGUG ....(((((......(((((....)))))...)))))(((((((....((((((..(((....)))....))))))...........((.(....)))....))))))).... (-23.76 = -24.00 + 0.24)
Location | 12,337,625 – 12,337,736 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 91.97 |
Mean single sequence MFE | -23.26 |
Consensus MFE | -16.16 |
Energy contribution | -16.44 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.05 |
Mean z-score | -2.65 |
Structure conservation index | 0.69 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625433 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12337625 111 - 27905053 CACCCACACAGGCCAGUCUUUCGCACAUACAUAC--AUACAUAUUUAAUCAUCUAAUAUUACGUAUUUUCUGUGCGUUGGCAUUGCGCAAUCACGCGCUUAACAACCAAAACA ...........(((((.....((((((...((((--.((.(((((.........))))))).))))....)))))))))))...((((......))))............... ( -21.90) >DroSec_CAF1 6473 107 - 1 CACCCACACAGGCCAGUCUUUCGCACAUAC------AUACAUAUUUAAUCAUCUAAUAUUACGUAUUUUCUGUGCGUUGGCAUUGCGCAAUCAUGCGCUUAACAACCCAAACA ...........(((((.....((((((...------(((((((((.........)))))...))))....)))))))))))...(((((....)))))............... ( -21.60) >DroSim_CAF1 5640 107 - 1 CACCCACACAGGCCAGUCUUUCGCACAUAC------AUACAUAUUUAAUCAUCUAAUAUUACGUAUUUUCUGUGCGUUGGCAUUGCGCAAUCAUGCGCUUAACAACCAAAACA ...........(((((.....((((((...------(((((((((.........)))))...))))....)))))))))))...(((((....)))))............... ( -21.60) >DroEre_CAF1 5915 107 - 1 CACCCACACAGUAGAGUCUUUCGCACAUGCA------UACAUAUUUAAUCAUCUAAUAUUACGUAUUUUCUGUGCGUUGGCAUUGCGCAAUCAUGCGCUUAACAACCAAAACA ...............(((...((((((...(------((((((((.........)))))...))))....))))))..)))...(((((....)))))............... ( -20.00) >DroYak_CAF1 1951 113 - 1 CACCCACACAGUGGAGUCUUUGGCACAUGCAGACUCGUACAUAUUUAAUCAUCUAAUAUUUCGUAUUUGCUGUGCGUUGGCAUUGCGCAAUCAUGCGCCUAACAACCAAAACA ...((((...)))).((.(((((((((.(((((..((...(((((.........)))))..))..))))))))))(((((....(((((....))))))))))...)))))). ( -31.20) >consensus CACCCACACAGGCCAGUCUUUCGCACAUACA_____AUACAUAUUUAAUCAUCUAAUAUUACGUAUUUUCUGUGCGUUGGCAUUGCGCAAUCAUGCGCUUAACAACCAAAACA ...............(((...((((((.........(((((((((.........)))))...))))....))))))..)))...((((......))))............... (-16.16 = -16.44 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:27 2006