Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,337,022 – 12,337,115 |
Length | 93 |
Max. P | 0.910819 |
Location | 12,337,022 – 12,337,115 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 82.96 |
Mean single sequence MFE | -32.60 |
Consensus MFE | -20.83 |
Energy contribution | -21.57 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.03 |
Mean z-score | -2.39 |
Structure conservation index | 0.64 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.910819 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12337022 93 + 27905053 AUAGCAUUAACCUUUGGCAGCUACAUUGUGU--UAAAUCGAAAUCGAUAUGGCAGAGAUGCUGGGC---------------------UGGGUUAUUCCAGUAGCCAGCCAAUUGCA ...(((...........((((....((.(((--((.((((....)))).))))).))..))))(((---------------------(((.((((....))))))))))...))). ( -29.90) >DroSec_CAF1 5859 95 + 1 AUAGCAUUAACCUUUGCCAGCUACAUUGUGUGUAAAAUCGAAAUCGAUAUGGCAGAGAUGCUGGGC---------------------UGGGUUAUUUCACUAGCCAGCCAAUUGCA .((((((....((((((((..(((((...)))))..((((....)))).))))))))))))))(((---------------------(((.(((......)))))))))....... ( -32.60) >DroEre_CAF1 5239 114 + 1 AUAGCAUUAACCUUUGCCAGCUACAUUGUGU--AAAAUCGAAAUCGAUAUGGCAGAGAUGCUGGGUAUUCGACGUCCGCCAAGGGAAUGGGUUAUUUCAGUAGCCAGCCAAUUGCA ...(((.....((((((((..(((.....))--)..((((....)))).))))))))..(((((.((((.((.((...(((......)))...)).)))))).)))))....))). ( -32.40) >DroYak_CAF1 1340 114 + 1 AUAGCAUUAACCUUUGGCAGCUACAUUGUGU--AAAAUCGAAAUCGAUAUGGCAGAGAAGCUGGGUGUUCGGCGUUGGCCAAGGGAAUGGGUUAUUUCAGUAGCCAGCCAAUUGCA ...(((....(((((((((((....((.(((--...((((....))))...))).))..(((((....)))))))).))))))))....((((((....)))))).......))). ( -35.50) >consensus AUAGCAUUAACCUUUGCCAGCUACAUUGUGU__AAAAUCGAAAUCGAUAUGGCAGAGAUGCUGGGC_____________________UGGGUUAUUUCAGUAGCCAGCCAAUUGCA .((((((....((((((((((......)).......((((....)))).))))))))))))))(((.......................((((((....)))))).)))....... (-20.83 = -21.57 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:25 2006