Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,334,812 – 12,335,000 |
Length | 188 |
Max. P | 0.879664 |
Location | 12,334,812 – 12,334,930 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.86 |
Mean single sequence MFE | -24.17 |
Consensus MFE | -10.91 |
Energy contribution | -11.80 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.17 |
Mean z-score | -1.85 |
Structure conservation index | 0.45 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568847 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12334812 118 + 27905053 AACAACGUAAACAGUAAAAUAAACAAUAGCAACAACAAGGCUUGC--CAAUGAAUUGCACUAAUAGUUUGUGUGUAAAAGCUGCCUGUUGUAAAAGCAGGCACAUAAAAAGAAAAUCCCC ......((...................(((........((....)--)......(((((((((....))).))))))..)))(((((((.....)))))))))................. ( -21.80) >DroPse_CAF1 6318 106 + 1 -------------GGUGGAUACAUAAAAGUACAAAGACGCCUUCCAACAAUGAGUUGCACUAAUAGUUUGUAUGUGGCAGGGGCA-GGGGCAGCAGCAGCCUGGGGGCAAGAAAACGACA -------------.((.(.(((......))).......((((((.........((..((.(((....)))..))..))..((((.-...((....)).)))))))))).......).)). ( -21.10) >DroSec_CAF1 3605 118 + 1 AACAACGCAAACAGUAAAAUAAACAAUAGCAACAACAAGGCUUGC--CAAUGAAUUGCACUAAUAGUUUGUGUGUAAAAGCUGCCUGUUGUAAAAGCAGGCACAUAAAAAGAAAAUCCCC .(((.(((((((.((.......))....((((......((....)--)......)))).......))))))))))....(.((((((((.....)))))))))................. ( -26.40) >DroSim_CAF1 2817 118 + 1 AACAACGCAAACAGUAAAAUAAACAAUAGCAACAACAAGGCUUGC--CAAUGAAUUGCACUAAUAGUUUGUGUGUAAAAGCUGCCUGUUGUAAAAGCAGGCACAUAAAAAGAAAAUCCCC .(((.(((((((.((.......))....((((......((....)--)......)))).......))))))))))....(.((((((((.....)))))))))................. ( -26.40) >DroEre_CAF1 2937 118 + 1 AAGAACACAAACAGUAAAAUAAACAAUAGCAACAACAAGGCUUGC--CAAUGAAUUGCACUAAUAGUUUGUGUGUAAAAGCUGCCUGUUGUAAAAGCAGGCACAUAAAAAGAAAAUCCCC ....((((((((.((.......))....((((......((....)--)......)))).......))))))))......(.((((((((.....)))))))))................. ( -26.30) >DroPer_CAF1 2036 106 + 1 -------------GUUGGAUACAUAAAAGUACAAAGACGCCUUCCAACAAUGAGUUGCACUAAUAGUUUGUAUGUGGCAGGGGCA-GGGGCAGCAGCAGCCUGGGGGCAAGAAAACGACA -------------((((..(((......))).......((((((.........((..((.(((....)))..))..))..((((.-...((....)).)))))))))).......)))). ( -23.00) >consensus AACAACGCAAACAGUAAAAUAAACAAUAGCAACAACAAGGCUUGC__CAAUGAAUUGCACUAAUAGUUUGUGUGUAAAAGCUGCCUGUUGUAAAAGCAGGCACAUAAAAAGAAAAUCCCC .......................................((((......(..(((((......)))))..)......))))((((((((.....)))))))).................. (-10.91 = -11.80 + 0.89)
Location | 12,334,890 – 12,335,000 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 99.55 |
Mean single sequence MFE | -24.62 |
Consensus MFE | -24.62 |
Energy contribution | -24.62 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.40 |
Structure conservation index | 1.00 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.879664 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12334890 110 + 27905053 CUGCCUGUUGUAAAAGCAGGCACAUAAAAAGAAAAUCCCCAAACUGUUUGGAGUAGCAGCAACCGCAUCUACAUGAGAACAAGCUGUAAAAAUUAUAGGGAAAUAGCAAA .((((((((.....)))))))).............((((...(((......))).(((((.......((.....))......)))))..........))))......... ( -24.62) >DroSec_CAF1 3683 110 + 1 CUGCCUGUUGUAAAAGCAGGCACAUAAAAAGAAAAUCCCCAAACUGUUUGGAGUAGCAGCAACCGCAUCUACAUGAGAACAAGCUGUAAAAAUUAUAGGGAAAUAGCAAA .((((((((.....)))))))).............((((...(((......))).(((((.......((.....))......)))))..........))))......... ( -24.62) >DroSim_CAF1 2895 110 + 1 CUGCCUGUUGUAAAAGCAGGCACAUAAAAAGAAAAUCCCCAAACUGUUUGGAGUAGCAGCAACCGCAUCUACAUGAGAACAAGCUGUAAAAAUUAUAGGGAAAUAGCAAA .((((((((.....)))))))).............((((...(((......))).(((((.......((.....))......)))))..........))))......... ( -24.62) >DroEre_CAF1 3015 110 + 1 CUGCCUGUUGUAAAAGCAGGCACAUAAAAAGAAAAUCCCCAAACUGUUUGGAGUAGCAGCAACCGCAUCUACAUGAGAACAAGCUGUAAAAAUUAUAGGGAAAUAGUAAA .((((((((.....)))))))).............((((...(((......))).(((((.......((.....))......)))))..........))))......... ( -24.62) >consensus CUGCCUGUUGUAAAAGCAGGCACAUAAAAAGAAAAUCCCCAAACUGUUUGGAGUAGCAGCAACCGCAUCUACAUGAGAACAAGCUGUAAAAAUUAUAGGGAAAUAGCAAA .((((((((.....)))))))).............((((...(((......))).(((((.......((.....))......)))))..........))))......... (-24.62 = -24.62 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:17 2006