Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,333,813 – 12,333,912 |
Length | 99 |
Max. P | 0.563481 |
Location | 12,333,813 – 12,333,912 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 89.70 |
Mean single sequence MFE | -27.76 |
Consensus MFE | -20.36 |
Energy contribution | -21.40 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.12 |
Mean z-score | -1.68 |
Structure conservation index | 0.73 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.563481 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12333813 99 - 27905053 UCAGAAACUCC-UUUGACUCACUGUGCGGUGAGU----GAGCGAGUUUGUUAAACAGUGUAAAGUUACACGCAACUAAGCACUUAACUGCAUAAAAGCUGGAGC (((((((((((-((..(((((((....)))))))----))).))))))(((((...(((((....)))))((......))..)))))..........))))... ( -27.80) >DroPse_CAF1 5668 104 - 1 GCACAGACUGCACUUUGCACACUGUGUGGCAGGCACUCGCCUGAGUUUGCUUAACAGUGUAAAGUUACACGCAACUAAGCACUUAACUGCAUAAAAGCUCGAGC ((((((..(((.....)))..))))))..(((((....)))))((((((((((...(((((....))))).....))))))...))))((......))...... ( -30.30) >DroSec_CAF1 2670 99 - 1 UCAGGAACUCC-UUUGACUCACUGUGCGGUGAGU----GAGCGAGUUUGUUAAACAGUGUAAAGUUACACGCAACUAAGCACUUAACUGCAUAAAAGCUCGAGC ..(((....))-)((.(((((((....)))))))----.))(((((((........(((((....)))))(((..(((....)))..)))....)))))))... ( -27.00) >DroSim_CAF1 1827 99 - 1 UCAGGAACUCC-UUUGACUCACUGUGCGGUGAGU----GAGCGAGUUUGUUAAACAGUGUAAAGUUACACGCAACUAAGCACUUAACUGCAUAAAAGCUCGAGC ..(((....))-)((.(((((((....)))))))----.))(((((((........(((((....)))))(((..(((....)))..)))....)))))))... ( -27.00) >DroEre_CAF1 1852 99 - 1 UCAGAAACUCC-UUUGACUCACUGUGCGGUGAGC----GAGCGAGUUUGUUAAACAGUGUAAAGUUACACGCAACUAAGCACUUAACUGCAUAAAAGCUCGAGC (((((......-)))))((((((....))))))(----((((.....(((.....(((((..((((......))))..))))).....))).....)))))... ( -26.70) >consensus UCAGAAACUCC_UUUGACUCACUGUGCGGUGAGU____GAGCGAGUUUGUUAAACAGUGUAAAGUUACACGCAACUAAGCACUUAACUGCAUAAAAGCUCGAGC .......(((......(((((((....)))))))....((((.....(((.....(((((..((((......))))..))))).....))).....))))))). (-20.36 = -21.40 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:15 2006