Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,755,206 – 1,755,305 |
Length | 99 |
Max. P | 0.657567 |
Location | 1,755,206 – 1,755,305 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 82.42 |
Mean single sequence MFE | -23.01 |
Consensus MFE | -16.29 |
Energy contribution | -16.87 |
Covariance contribution | 0.58 |
Combinations/Pair | 1.18 |
Mean z-score | -1.75 |
Structure conservation index | 0.71 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.657567 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1755206 99 - 27905053 CGGCAACUUAUUUAUU-CUAGCUGUUUGAACUUCAUCAGGCAGCUCAUAAUGCUCAUAAUGCCGGCGAUAAUCGCGCCGAAGGGCGUUACAUUUUUAAGC- (((((.......((((-..((((((((((......))))))))))...)))).......)))))(((.....)))(((....)))...............- ( -31.44) >DroPse_CAF1 55569 90 - 1 AAGCGACUUAUUUAUU-UUAGCUGUUUGUACUUCAUCAGGCAGCUCAU---------AAUGCCUCUGAUAAUCGCGCUUAUGGGCGUUAAAUUUUUAAAG- ..((((.(((((((((-..(((((((((........)))))))))...---------)))).....)))))))))(((....)))...............- ( -20.80) >DroGri_CAF1 65756 89 - 1 UAGCUUCUUAUUUAUU--UAGCUGUUUGUACAUCAUCAGGCAGCUCAU---------AAUGCUUGUGAUUAUCUGGCGGUAGAACGUUAAAUUUUAAAGC- ..((((...(((((((--(.(((((..(...((((.((((((......---------..))))))))))...)..))))).)))...)))))....))))- ( -19.80) >DroSec_CAF1 64467 90 - 1 CGGCAACUUAUUUAUU-UUAGCUGUUUUAACUUCAUCAGGCAGCUCAU---------AAUGCAGGCGAUAAUCGCGCCGAAGGGCGUUACAUUUUUAAGC- .(....).........-..((((((((..........))))))))...---------...((..(((.....)))(((....))).............))- ( -19.40) >DroAna_CAF1 59193 92 - 1 UGGCAACUUAUUUAUUUUUGGCUGUUUGUACUUCAUCAGGCAGCUCAU---------AAUGCCGGCGAUAAUCGCGCUUACGGGCGUUAAAUUUUUAAGCC .(((...............(((((((((........)))))))))..(---------((((((((((.......))))....))))))).........))) ( -26.60) >DroPer_CAF1 62076 90 - 1 AAGCAACUUAUUUAUU-UUAGCUGUUUGUACUUCAUCAGGCAGCUCAU---------AAUGCCUCUGAUAAUCGCGCUUAUGGGCGUUAAAUUUUUAAAG- ................-..(((((((((........)))))))))..(---------(((((((.(((.........))).))))))))...........- ( -20.00) >consensus AAGCAACUUAUUUAUU_UUAGCUGUUUGUACUUCAUCAGGCAGCUCAU_________AAUGCCGGCGAUAAUCGCGCUGAAGGGCGUUAAAUUUUUAAGC_ ..(((..............(((((((((........)))))))))..............)))...........(((((....))))).............. (-16.29 = -16.87 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:56 2006