Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,329,874 – 12,329,994 |
Length | 120 |
Max. P | 0.978465 |
Location | 12,329,874 – 12,329,994 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -38.70 |
Consensus MFE | -37.70 |
Energy contribution | -38.03 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.70 |
Structure conservation index | 0.97 |
SVM decision value | 1.81 |
SVM RNA-class probability | 0.978465 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12329874 120 - 27905053 UUCCCAUAAAGUAUCUUGAAUAUUUCAGGUGUGCUCGCAAUUUAAGGGCCUGCGUCGCAUUCAGCUGCGGGUUCAUUAGAUGUCCACUGCAACUUCAUUUGCAGGGGCGCAAAAAAAAGA .........((((((((((.....))))).))))).((.(((((((((((((((..((.....))))))))))).))))))((((.((((((......)))))))))))).......... ( -39.30) >DroSec_CAF1 21186 120 - 1 UUCCCAUAAAGUAUCUUGAAUAUUUCAGGUGUGCUAGCAAUUUAAGGGCCUGCGUCGCAUUCAGCUGCGGGUUCAUUAGAUGUCCACUGCAACUUCAUUUGCAGGGGAGCAAAAAAAAGA .........((((((((((.....))))).))))).((.(((((((((((((((..((.....))))))))))).)))))).(((.((((((......)))))).))))).......... ( -37.00) >DroSim_CAF1 17225 119 - 1 UCCCCAUAAAGUAUCUUGAAUAUUUCAGGUGUGCUAGCAAUUUAAGGGCCUGCGUCGCAUUCAGCUGCGGGUUCAUUAGAUGUCCACUGCAACUUCAUUUGCAGGGGCGCAAAA-AAAGA .........((((((((((.....))))).))))).((.(((((((((((((((..((.....))))))))))).))))))((((.((((((......))))))))))))....-..... ( -39.80) >consensus UUCCCAUAAAGUAUCUUGAAUAUUUCAGGUGUGCUAGCAAUUUAAGGGCCUGCGUCGCAUUCAGCUGCGGGUUCAUUAGAUGUCCACUGCAACUUCAUUUGCAGGGGCGCAAAAAAAAGA .........((((((((((.....))))).))))).((.(((((((((((((((..((.....))))))))))).))))))((((.((((((......)))))))))))).......... (-37.70 = -38.03 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:14 2006