Locus 4676

Sequence ID 3R_DroMel_CAF1
Location 12,327,504 – 12,327,622
Length 118
Max. P 0.706797
window7678

overview

Window 8

Location 12,327,504 – 12,327,622
Length 118
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 92.70
Mean single sequence MFE -29.07
Consensus MFE -23.82
Energy contribution -24.27
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -2.36
Structure conservation index 0.82
SVM decision value 0.37
SVM RNA-class probability 0.706797
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12327504 118 - 27905053
ACCCACUGUUCUUCAUUUUCUUUUUUUGGCUCUUCAGCUGACAGAAAUAUUGAUGUCGCUAAUUGUAAUUACAUAUCAAUUAUAAUUGGCAUCCAAUCAG-GGUCGUAGGAGCAGCUUU
.....((((((((.((..((((...((((..........((((..........))))(((((((((((((.......)))))))))))))..))))..))-))..)))))))))).... ( -29.30)
>DroSec_CAF1 18625 116 - 1
ACUCACUGUUUUUUGUUUUUU---UUUUCCUCUUCAGCUGACAGAAAUAUUGAUGUCGCUAAUUGUAAUUACAUAUCAAUUAUAAUUGGCAUCCAAUCAGGGGUCGAAGGAGCAGCUUU
............(((((((((---(...(((((......((((..........))))(((((((((((((.......)))))))))))))........)))))..)))))))))).... ( -28.00)
>DroSim_CAF1 14697 118 - 1
ACCCACUGUUUUUUGUUUUUU-GAUUUGGCUCUUCAGCUGACAGAAAUAUUGAUGUCGCUAAUUGUAAUUACAUAUCAAUUAUAAUUGGCAUCCAAUCAGGGGUCGUAGGAGCAGCUUU
.....((((((((((.(((((-((((.((..........((((..........))))(((((((((((((.......)))))))))))))..))))))))))).)).)))))))).... ( -29.90)
>consensus
ACCCACUGUUUUUUGUUUUUU___UUUGGCUCUUCAGCUGACAGAAAUAUUGAUGUCGCUAAUUGUAAUUACAUAUCAAUUAUAAUUGGCAUCCAAUCAGGGGUCGUAGGAGCAGCUUU
.....((((((((............((((((....))))))..((....(((((...(((((((((((((.......))))))))))))).....)))))...))..)))))))).... (-23.82 = -24.27 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:10 2006