Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,326,907 – 12,327,099 |
Length | 192 |
Max. P | 0.984351 |
Location | 12,326,907 – 12,327,027 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -40.63 |
Consensus MFE | -38.82 |
Energy contribution | -38.60 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.65 |
Structure conservation index | 0.96 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.963438 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12326907 120 + 27905053 UCGGGCUCUUGCCCAACGUUGAUUAGCCUGCUCGAGGGGAAGUUACGUUUAUUGGUAGCAAAAUACAAUUCCCUUUGCCAUUGCACCAGACAAUUUGAUUUCCCCGACGGGUUCACGCCC ..((((....))))..(((.((...(((((.((..((((((((((.(((..(((((.((((....(((......)))...)))))))))..))).))))))))))))))))))))))... ( -40.60) >DroSec_CAF1 18060 119 + 1 UCGGGCUCUUGCCCAACGUUGAUUAGCCUGCUCGAGGGGAAGUUACGUUUAUUGGUAGCGAAAUACAAUUCCCUUUGCCAUUGCACCAGACAAUUUGAUUUCCCCGACGGG-UCACGCCC ..((((....))))...........((.((((((.((((((((((.(((..(((((.((((....(((......)))...)))))))))..))).))))))))))..))))-.)).)).. ( -40.80) >DroSim_CAF1 14113 118 + 1 UCGGGCUCUUGCCCAACGUUGAUUAGC-UGCUCGAGGGGAAGUUACGUUUAUUGGUAGCAAAAUACAAUUCCCUUUGCCAUUGCACCAGACAAUUUGAUUUCCCCGACGGG-UCACGCCC ..((((....))))...........((-((((((.((((((((((.(((..(((((.((((....(((......)))...)))))))))..))).))))))))))..))))-.)).)).. ( -40.50) >consensus UCGGGCUCUUGCCCAACGUUGAUUAGCCUGCUCGAGGGGAAGUUACGUUUAUUGGUAGCAAAAUACAAUUCCCUUUGCCAUUGCACCAGACAAUUUGAUUUCCCCGACGGG_UCACGCCC ..((((....))))...........((.((((((.((((((((((.(((..(((((.((((....(((......)))...)))))))))..))).))))))))))..))))..)).)).. (-38.82 = -38.60 + -0.22)
Location | 12,326,947 – 12,327,067 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -41.13 |
Consensus MFE | -39.65 |
Energy contribution | -39.43 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.77 |
Structure conservation index | 0.96 |
SVM decision value | 1.74 |
SVM RNA-class probability | 0.975108 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12326947 120 + 27905053 AGUUACGUUUAUUGGUAGCAAAAUACAAUUCCCUUUGCCAUUGCACCAGACAAUUUGAUUUCCCCGACGGGUUCACGCCCACAAAAGUGGGCGCUCGUCAGGGAAAUUGGCAACUUCCGG .(((((........)))))...............((((((((((....).))))..((((((((.((((((....(((((((....))))))))))))).)))))))))))))....... ( -43.80) >DroSec_CAF1 18100 119 + 1 AGUUACGUUUAUUGGUAGCGAAAUACAAUUCCCUUUGCCAUUGCACCAGACAAUUUGAUUUCCCCGACGGG-UCACGCCCACAAAAGGGGGCGCUCGUCAGGGAAAUUGGCAACUUCCGG .(((((........)))))...............((((((((((....).))))..((((((((.((((((-...(((((........))))))))))).)))))))))))))....... ( -39.80) >DroSim_CAF1 14152 119 + 1 AGUUACGUUUAUUGGUAGCAAAAUACAAUUCCCUUUGCCAUUGCACCAGACAAUUUGAUUUCCCCGACGGG-UCACGCCCACAAAAGGGGGCGCUCGUCAGGGAAAUUGGCAACUUCCGG .(((((........)))))...............((((((((((....).))))..((((((((.((((((-...(((((........))))))))))).)))))))))))))....... ( -39.80) >consensus AGUUACGUUUAUUGGUAGCAAAAUACAAUUCCCUUUGCCAUUGCACCAGACAAUUUGAUUUCCCCGACGGG_UCACGCCCACAAAAGGGGGCGCUCGUCAGGGAAAUUGGCAACUUCCGG ((((..(((...((((.((((....(((......)))...)))))))))))...(..(((((((.((((((....(((((........))))))))))).)))))))..).))))..... (-39.65 = -39.43 + -0.22)
Location | 12,326,947 – 12,327,067 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -47.57 |
Consensus MFE | -45.00 |
Energy contribution | -45.33 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -3.94 |
Structure conservation index | 0.95 |
SVM decision value | 1.84 |
SVM RNA-class probability | 0.979447 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12326947 120 - 27905053 CCGGAAGUUGCCAAUUUCCCUGACGAGCGCCCACUUUUGUGGGCGUGAACCCGUCGGGGAAAUCAAAUUGUCUGGUGCAAUGGCAAAGGGAAUUGUAUUUUGCUACCAAUAAACGUAACU .....((((((..((((((((((((.((((((((....)))))))).....))))))))))))....((((.((((((((..((((......))))...)))).))))))))..)))))) ( -51.10) >DroSec_CAF1 18100 119 - 1 CCGGAAGUUGCCAAUUUCCCUGACGAGCGCCCCCUUUUGUGGGCGUGA-CCCGUCGGGGAAAUCAAAUUGUCUGGUGCAAUGGCAAAGGGAAUUGUAUUUCGCUACCAAUAAACGUAACU ..((...(((((.((((((((((((.((((((.(....).))))))..-..))))))))))))...(((((.....))))))))))((.(((......))).)).))............. ( -44.60) >DroSim_CAF1 14152 119 - 1 CCGGAAGUUGCCAAUUUCCCUGACGAGCGCCCCCUUUUGUGGGCGUGA-CCCGUCGGGGAAAUCAAAUUGUCUGGUGCAAUGGCAAAGGGAAUUGUAUUUUGCUACCAAUAAACGUAACU .....((((((..((((((((((((.((((((.(....).))))))..-..))))))))))))....((((.((((((((..((((......))))...)))).))))))))..)))))) ( -47.00) >consensus CCGGAAGUUGCCAAUUUCCCUGACGAGCGCCCCCUUUUGUGGGCGUGA_CCCGUCGGGGAAAUCAAAUUGUCUGGUGCAAUGGCAAAGGGAAUUGUAUUUUGCUACCAAUAAACGUAACU .....((((((..((((((((((((.((((((.(....).)))))).....))))))))))))....((((.((((((((..((((......))))...)))).))))))))..)))))) (-45.00 = -45.33 + 0.33)
Location | 12,326,987 – 12,327,099 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 97.61 |
Mean single sequence MFE | -44.20 |
Consensus MFE | -42.13 |
Energy contribution | -42.47 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -3.23 |
Structure conservation index | 0.95 |
SVM decision value | 1.97 |
SVM RNA-class probability | 0.984351 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12326987 112 + 27905053 UUGCACCAGACAAUUUGAUUUCCCCGACGGGUUCACGCCCACAAAAGUGGGCGCUCGUCAGGGAAAUUGGCAACUUCCGGCGAAAGUGUCGCUGCUACUGGGGAUUUCUUAA .....((((.....(..(((((((.((((((....(((((((....))))))))))))).)))))))..).......((((((.....))))))...))))........... ( -47.60) >DroSec_CAF1 18140 111 + 1 UUGCACCAGACAAUUUGAUUUCCCCGACGGG-UCACGCCCACAAAAGGGGGCGCUCGUCAGGGAAAUUGGCAACUUCCGGCGAAAGUGUCGCUGCUACUGGGAAUUUCUUAA .....((((.....(..(((((((.((((((-...(((((........))))))))))).)))))))..).......((((((.....))))))...))))........... ( -43.60) >DroSim_CAF1 14192 111 + 1 UUGCACCAGACAAUUUGAUUUCCCCGACGGG-UCACGCCCACAAAAGGGGGCGCUCGUCAGGGAAAUUGGCAACUUCCGGCGAAAGUGUCGCUUCUACUGGGAAUUUCUUAA .....((((.....(..(((((((.((((((-...(((((........))))))))))).)))))))..)........(((((.....)))))....))))........... ( -41.40) >consensus UUGCACCAGACAAUUUGAUUUCCCCGACGGG_UCACGCCCACAAAAGGGGGCGCUCGUCAGGGAAAUUGGCAACUUCCGGCGAAAGUGUCGCUGCUACUGGGAAUUUCUUAA .....((((.....(..(((((((.((((((....(((((........))))))))))).)))))))..).......((((((.....))))))...))))........... (-42.13 = -42.47 + 0.33)
Location | 12,326,987 – 12,327,099 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 97.61 |
Mean single sequence MFE | -43.03 |
Consensus MFE | -40.33 |
Energy contribution | -40.33 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.98 |
Structure conservation index | 0.94 |
SVM decision value | 1.69 |
SVM RNA-class probability | 0.972470 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12326987 112 - 27905053 UUAAGAAAUCCCCAGUAGCAGCGACACUUUCGCCGGAAGUUGCCAAUUUCCCUGACGAGCGCCCACUUUUGUGGGCGUGAACCCGUCGGGGAAAUCAAAUUGUCUGGUGCAA .................(((((((.....))))((((..(((...((((((((((((.((((((((....)))))))).....)))))))))))))))....)))).))).. ( -46.10) >DroSec_CAF1 18140 111 - 1 UUAAGAAAUUCCCAGUAGCAGCGACACUUUCGCCGGAAGUUGCCAAUUUCCCUGACGAGCGCCCCCUUUUGUGGGCGUGA-CCCGUCGGGGAAAUCAAAUUGUCUGGUGCAA .................(((((((.....))))((((..(((...((((((((((((.((((((.(....).))))))..-..)))))))))))))))....)))).))).. ( -42.00) >DroSim_CAF1 14192 111 - 1 UUAAGAAAUUCCCAGUAGAAGCGACACUUUCGCCGGAAGUUGCCAAUUUCCCUGACGAGCGCCCCCUUUUGUGGGCGUGA-CCCGUCGGGGAAAUCAAAUUGUCUGGUGCAA ..............................(((((((..(((...((((((((((((.((((((.(....).))))))..-..)))))))))))))))....)))))))... ( -41.00) >consensus UUAAGAAAUUCCCAGUAGCAGCGACACUUUCGCCGGAAGUUGCCAAUUUCCCUGACGAGCGCCCCCUUUUGUGGGCGUGA_CCCGUCGGGGAAAUCAAAUUGUCUGGUGCAA ..............................(((((((..(((...((((((((((((.((((((.(....).)))))).....)))))))))))))))....)))))))... (-40.33 = -40.33 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:09 2006