Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,324,565 – 12,324,685 |
Length | 120 |
Max. P | 0.632642 |
Location | 12,324,565 – 12,324,685 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -43.67 |
Consensus MFE | -44.11 |
Energy contribution | -43.67 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.06 |
Mean z-score | -1.42 |
Structure conservation index | 1.01 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.632642 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12324565 120 - 27905053 GAAAAUGUUGCGAUUUCCGCAUGUCUGCGGUCUUUGUUUGCUGCUUAAAUAUUGGCAGAUUUUGGCCUUGGCCCCGUUUCGGACUUCCGAGCCAAUGGUCGCCAGGUGCCAGCGAUGGAU ......(((((.....(((((....)))))..........(((((........)))))....((((((((((.(((((((((....))))...)))))..)))))).))))))))).... ( -43.40) >DroSec_CAF1 15782 120 - 1 GAAAAUGUCGCGAUUUCCGCAUGUCUGCGGUCUAUGUUUGCUGCUCAAAUAUUGGCAGAUUUUGGCCUUGGCCCCGUUUCGGACUUCCGGGCCAAUGGUCGCCAGGUGCCAGCGAUGGGU ......(((((.....(((((....)))))..........(((((........)))))....((((((((((.(((((((((....))))...)))))..)))))).))))))))).... ( -43.80) >DroSim_CAF1 11854 120 - 1 GAAAAUGUCGCGAUUUCCGCAUGUCUGCGGUCUUUGUUUGCUGCUCAAAUAUUGGCAGAUUUUGGCCUUGGCCCCGUUUCGGACUUCCGGGCCAAUGGUCGCCAGGUGCCAGCGAUGGGU ......(((((.....(((((....)))))..........(((((........)))))....((((((((((.(((((((((....))))...)))))..)))))).))))))))).... ( -43.80) >consensus GAAAAUGUCGCGAUUUCCGCAUGUCUGCGGUCUUUGUUUGCUGCUCAAAUAUUGGCAGAUUUUGGCCUUGGCCCCGUUUCGGACUUCCGGGCCAAUGGUCGCCAGGUGCCAGCGAUGGGU ......(((((.....(((((....)))))..........(((((........)))))....((((((((((.(((((((((....))))...)))))..)))))).))))))))).... (-44.11 = -43.67 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:05 2006