Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,322,314 – 12,322,434 |
Length | 120 |
Max. P | 0.569822 |
Location | 12,322,314 – 12,322,434 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -46.17 |
Consensus MFE | -43.54 |
Energy contribution | -43.43 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -1.60 |
Structure conservation index | 0.94 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569822 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12322314 120 + 27905053 GCUUGGAAAAUUGGCGCGUGCGAAUGCUCCUGGUUUCUGGGCCCGGUUGUGGUUAGCCAUAGCUCUUCGCUGGAAGAAUCAAUGCUAAUCAGCGAGGGUUGUUCGAGAAGUCGGCGAGUG (((..((((...((.((((....)))).))...))))..)))..((((((((....)))))))).((((((((((.((((..((((....))))..)))).))).......))))))).. ( -43.91) >DroSec_CAF1 13556 120 + 1 GCUUGGAAAAUUGGCGCGUGCGAAUGCUCCUGGUUUCUGGGCCCGCUUGUGGUUAGGCACAGCUCUUCGCUGGAAGAAUCAAUGCUAAUCAGCGAGGGCUGUUCGAGAAGUCGGCGAGUG (((..((((...((.((((....)))).))...))))..))).(((((((.(...((.(((((.(((((((((.((........))..)))))))))))))))).......).))))))) ( -47.00) >DroSim_CAF1 9645 120 + 1 GCUUGGAAAAUUGGCGCGUGCGAAUGCUCCUGGUUUCUGGGCCCGCUUGUGGUUAGCCACAGCUCUUCGCUGGAAGAAUCAAUGCUAAUCAGCGAGGGCUGUUCGAGAAGUCGGCGAGUG (((..((((...((.((((....)))).))...))))..))).(((((((((....))(((((.(((((((((.((........))..)))))))))))))).(((....)))))))))) ( -47.60) >consensus GCUUGGAAAAUUGGCGCGUGCGAAUGCUCCUGGUUUCUGGGCCCGCUUGUGGUUAGCCACAGCUCUUCGCUGGAAGAAUCAAUGCUAAUCAGCGAGGGCUGUUCGAGAAGUCGGCGAGUG (((..((((...((.((((....)))).))...))))..))).(((((((........(((((.(((((((((.((........))..)))))))))))))).(((....)))))))))) (-43.54 = -43.43 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:04 2006