Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,321,747 – 12,321,867 |
Length | 120 |
Max. P | 0.885692 |
Location | 12,321,747 – 12,321,867 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.28 |
Mean single sequence MFE | -37.74 |
Consensus MFE | -32.32 |
Energy contribution | -33.10 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.04 |
Mean z-score | -2.81 |
Structure conservation index | 0.86 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.885692 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12321747 120 + 27905053 CAAUAAAGGCGUCCUAACGGGUCUUGCUUAUAUCUAAGUUUUAGCCGAUGCGCCGCUGCCAAGAACAAAAGAAUCAAGGGAGAGCCCAUAGGCAGUGGAAAAAUGCUAACAAGACUGCCG .......(((..((....))((((((((((....))))..(((((.......((((((((..((.........))..(((....)))...))))))))......))))))))))).))). ( -38.72) >DroSec_CAF1 12960 120 + 1 CAAUAAAAGCGUCUUAACGGUUCUUGCUUAUAUCCAAGUUUGAGCCGAUGCGCCGCUGCCAAGAACAAAAGAACCAAGGGAGAGCCCAUAGGCAGUGGAAAAAUGCUAACAAGACAGCCG ........(((((((..((((((..((((......))))..))))))..(((((((((((.....(....)......(((....)))...)))))))).....)))....))))).)).. ( -38.00) >DroSim_CAF1 9071 120 + 1 CAAUAAAAGCGUCUUAACGGUUCUUGCUUAUAUCUAAGUUUGAGCCGAUGCGCCGCUGCCAAGAACAAAAGAACCAAGGGAGAGCCCAUAGGCAGUGGAAAAAUGCUAACAAGCCCGCCG .......(((((.....((((((..(((((....)))))..)))))).....((((((((.....(....)......(((....)))...))))))))....)))))............. ( -36.50) >consensus CAAUAAAAGCGUCUUAACGGUUCUUGCUUAUAUCUAAGUUUGAGCCGAUGCGCCGCUGCCAAGAACAAAAGAACCAAGGGAGAGCCCAUAGGCAGUGGAAAAAUGCUAACAAGACAGCCG .......(((((.....((((((..(((((....)))))..)))))).....((((((((.....(....)......(((....)))...))))))))....)))))............. (-32.32 = -33.10 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:02 2006