Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,321,157 – 12,321,274 |
Length | 117 |
Max. P | 0.665900 |
Location | 12,321,157 – 12,321,274 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -33.63 |
Consensus MFE | -30.17 |
Energy contribution | -30.17 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.84 |
Structure conservation index | 0.90 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.582048 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12321157 117 + 27905053 CUGCAGGCUGAAAGCCGAGC---GCGAUGAGACUAGUUUUUCACACACAAGAAAACAAGAAAAGCCACGACAAGUGGCUGAGGAAAAGCGCUGGGAGUGAAAUGUGGCAGGGGUGUGGAG ((((..((...(..((.(((---((.......((.((((((.........)))))).))...((((((.....))))))........))))).))..).....)).)))).......... ( -33.80) >DroSec_CAF1 12373 120 + 1 CUGCAGGCUGAAAGCCGAGACUAGCGAUGAGACUAGUUUUUCACACACAAGAAAACAAGAAAAGCCACGACAAGUGGCUGAGGAAAAGCGCUGGGAGUGAAAUGUGGCAGGGGUGUGGAG ((.((.(((....((((((((((((.....).))))))))((((.(...((...........((((((.....))))))...........))..).)))).....)))...))).)).)) ( -33.55) >DroSim_CAF1 8484 120 + 1 CUGCAGGCUGAAAGCCGAGACUAGCGAUGAGACUAGUUUUUCACACACAAGAAAACAAGAAAAGCCACGACAAGUGGCUGAGGAAAAGCGCUGGGAGUGAAAUGUGGCAGGGGUGUGGAG ((.((.(((....((((((((((((.....).))))))))((((.(...((...........((((((.....))))))...........))..).)))).....)))...))).)).)) ( -33.55) >consensus CUGCAGGCUGAAAGCCGAGACUAGCGAUGAGACUAGUUUUUCACACACAAGAAAACAAGAAAAGCCACGACAAGUGGCUGAGGAAAAGCGCUGGGAGUGAAAUGUGGCAGGGGUGUGGAG ((.((.(((....((((......((..(.((....(((((((.(......)...........((((((.....))))))...))))))).)).)..))......))))...))).)).)) (-30.17 = -30.17 + 0.00)
Location | 12,321,157 – 12,321,274 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -27.90 |
Consensus MFE | -23.97 |
Energy contribution | -25.30 |
Covariance contribution | 1.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.24 |
Structure conservation index | 0.86 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.665900 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12321157 117 - 27905053 CUCCACACCCCUGCCACAUUUCACUCCCAGCGCUUUUCCUCAGCCACUUGUCGUGGCUUUUCUUGUUUUCUUGUGUGUGAAAAACUAGUCUCAUCGC---GCUCGGCUUUCAGCCUGCAG ..........((((..............(((((........((((((.....))))))...((..(((((........)))))...)).......))---))).(((.....))).)))) ( -27.70) >DroSec_CAF1 12373 120 - 1 CUCCACACCCCUGCCACAUUUCACUCCCAGCGCUUUUCCUCAGCCACUUGUCGUGGCUUUUCUUGUUUUCUUGUGUGUGAAAAACUAGUCUCAUCGCUAGUCUCGGCUUUCAGCCUGCAG ..........((((....((((((.(.(((...........((((((.....))))))............))).).)))))).((((((......))))))...(((.....))).)))) ( -28.00) >DroSim_CAF1 8484 120 - 1 CUCCACACCCCUGCCACAUUUCACUCCCAGCGCUUUUCCUCAGCCACUUGUCGUGGCUUUUCUUGUUUUCUUGUGUGUGAAAAACUAGUCUCAUCGCUAGUCUCGGCUUUCAGCCUGCAG ..........((((....((((((.(.(((...........((((((.....))))))............))).).)))))).((((((......))))))...(((.....))).)))) ( -28.00) >consensus CUCCACACCCCUGCCACAUUUCACUCCCAGCGCUUUUCCUCAGCCACUUGUCGUGGCUUUUCUUGUUUUCUUGUGUGUGAAAAACUAGUCUCAUCGCUAGUCUCGGCUUUCAGCCUGCAG ..........((((....((((((.(.(((...........((((((.....))))))............))).).)))))).((((((......))))))...(((.....))).)))) (-23.97 = -25.30 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:01 2006