Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,319,153 – 12,319,273 |
Length | 120 |
Max. P | 0.793279 |
Location | 12,319,153 – 12,319,273 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.50 |
Mean single sequence MFE | -34.77 |
Consensus MFE | -32.19 |
Energy contribution | -31.97 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.04 |
Structure conservation index | 0.93 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.793279 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12319153 120 - 27905053 GGGCCAAAAGACAGCCGAGCCGUGGGCAAACAAAAAAUGCUUAAUUAUGUCAUGAGGGUGGGAACUAAGGCAGCAGAAAAUAAUUUGCAAAGGCUGAUUGCAGCCAGGCCGUGAGCAACA .((((........(((...((.((((((.........)))))).......(((....)))))......))).(((((......)))))...(((((....))))).)))).......... ( -31.70) >DroSec_CAF1 10406 120 - 1 GGGCCAAAAGCCAGCCGAGCCGUAGGCAAACAAAAAAUGCUUAAUUAUGUCAUGAGGGUGGGAACUAAGGCAGCAGAAAAUAAUUUGCACAGGCUGAUUGCAGCCAGGCCGUGAGCAACA .(((.....))).(((........)))..........((((((....(.((((....)))).).....(((.(((((......)))))...(((((....)))))..))).))))))... ( -34.50) >DroSim_CAF1 6505 120 - 1 GGGCCAAACGGCAGCCGAGCCGUAGGCAAACAAAAAAUGCUUAAUUAUGUCAUGAGGGUGGGAACUAAGGCAGCAGAAAAUAAUUUGCAAAGGCUGAUUGCAGCCAGGCCGUGAGCAACA ..(((..(((((......))))).)))..........((((((....(.((((....)))).).....(((.(((((......)))))...(((((....)))))..))).))))))... ( -38.10) >consensus GGGCCAAAAGACAGCCGAGCCGUAGGCAAACAAAAAAUGCUUAAUUAUGUCAUGAGGGUGGGAACUAAGGCAGCAGAAAAUAAUUUGCAAAGGCUGAUUGCAGCCAGGCCGUGAGCAACA .((((........(((...((.((((((.........)))))).......(((....)))))......))).(((((......)))))...(((((....))))).)))).......... (-32.19 = -31.97 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:57 2006