Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,318,834 – 12,318,994 |
Length | 160 |
Max. P | 0.882490 |
Location | 12,318,834 – 12,318,954 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -33.60 |
Consensus MFE | -32.89 |
Energy contribution | -33.33 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -1.69 |
Structure conservation index | 0.98 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.744984 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12318834 120 + 27905053 ACAAAUUGUCGCUGUUGUUUUUUAUUUGGGCAUGCAAAUUUUUUCGCACACUCUGAGAACCGAAAACGGAAAAGUGCCAGGAAAACACAAUUGGAAAAUCACCGCACAGCGACGUGCGGA .(....(((((((((((((((((.....(((((.......((((((.......))))))(((....)))....))))).)))))))).....((.......))..)))))))))....). ( -29.50) >DroSec_CAF1 10087 120 + 1 ACAAAUUGUCGCUGUUGUUUUUUAUUUGGGCAUGCAAAUUUUUUCGCACACUCUGAGAACCGAAAACGGAAAGGUGCCCGGGAAAAACAAUUGGAAAAUCACCGCACAGCGACGUGCGGA ........((.(.((((((((((...(((((((.......((((((.......))))))(((....)))....))))))).)))))))))).)))......((((((......)))))). ( -35.70) >DroSim_CAF1 6186 120 + 1 ACAAAUUGUCGCUGUUGUUUUUUAUUUGGGCAUGCAAAUUUUUUCGCACACUCUGAGAACCGAAAACGGAAAAGUGCCCGGGAAAAACAAUUGGAAAAUCACCGCACAGCGACGUGCGGA ........((.(.((((((((((...(((((((.......((((((.......))))))(((....)))....))))))).)))))))))).)))......((((((......)))))). ( -35.60) >consensus ACAAAUUGUCGCUGUUGUUUUUUAUUUGGGCAUGCAAAUUUUUUCGCACACUCUGAGAACCGAAAACGGAAAAGUGCCCGGGAAAAACAAUUGGAAAAUCACCGCACAGCGACGUGCGGA ........((.(.((((((((((...(((((((.......((((((.......))))))(((....)))....))))))).)))))))))).)))......((((((......)))))). (-32.89 = -33.33 + 0.45)
Location | 12,318,834 – 12,318,954 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -34.53 |
Consensus MFE | -32.87 |
Energy contribution | -33.87 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.13 |
Structure conservation index | 0.95 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.882490 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12318834 120 - 27905053 UCCGCACGUCGCUGUGCGGUGAUUUUCCAAUUGUGUUUUCCUGGCACUUUUCCGUUUUCGGUUCUCAGAGUGUGCGAAAAAAUUUGCAUGCCCAAAUAAAAAACAACAGCGACAAUUUGU .......((((((((..((.......)).....((((((...((((((((.(((....))).....)))))(((((((....)))))))))).......))))))))))))))....... ( -31.60) >DroSec_CAF1 10087 120 - 1 UCCGCACGUCGCUGUGCGGUGAUUUUCCAAUUGUUUUUCCCGGGCACCUUUCCGUUUUCGGUUCUCAGAGUGUGCGAAAAAAUUUGCAUGCCCAAAUAAAAAACAACAGCGACAAUUUGU .......((((((((..((.......))...(((((((...((((......(((....)))..........(((((((....))))))))))).....)))))))))))))))....... ( -35.00) >DroSim_CAF1 6186 120 - 1 UCCGCACGUCGCUGUGCGGUGAUUUUCCAAUUGUUUUUCCCGGGCACUUUUCCGUUUUCGGUUCUCAGAGUGUGCGAAAAAAUUUGCAUGCCCAAAUAAAAAACAACAGCGACAAUUUGU .......((((((((..((.......))...(((((((...(((((((((.(((....))).....)))))(((((((....))))))))))).....)))))))))))))))....... ( -37.00) >consensus UCCGCACGUCGCUGUGCGGUGAUUUUCCAAUUGUUUUUCCCGGGCACUUUUCCGUUUUCGGUUCUCAGAGUGUGCGAAAAAAUUUGCAUGCCCAAAUAAAAAACAACAGCGACAAUUUGU .......((((((((..((.......))...(((((((...(((((((((.(((....))).....)))))(((((((....))))))))))).....)))))))))))))))....... (-32.87 = -33.87 + 1.00)
Location | 12,318,874 – 12,318,994 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -39.33 |
Consensus MFE | -37.57 |
Energy contribution | -37.47 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -1.87 |
Structure conservation index | 0.96 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.795175 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12318874 120 + 27905053 UUUUCGCACACUCUGAGAACCGAAAACGGAAAAGUGCCAGGAAAACACAAUUGGAAAAUCACCGCACAGCGACGUGCGGACCAAAUUGUGGGGCUCCCAAGGGGGCGGCAUUUGUGGCAA .....((.(((........(((....)))..(((((((.......(((((((((.......((((((......)))))).)).)))))))..(((((....))))))))))))))))).. ( -44.40) >DroSec_CAF1 10127 119 + 1 UUUUCGCACACUCUGAGAACCGAAAACGGAAAGGUGCCCGGGAAAAACAAUUGGAAAAUCACCGCACAGCGACGUGCGGACCAAAUUGUGGGGCUCUCAAGG-GGCGGCAUUUGUGGCAA ..........((((((((.(((....)))......((((.(.((.....(((....)))..((((((......))))))......)).).)))))))).)))-)((.((....)).)).. ( -35.90) >DroSim_CAF1 6226 120 + 1 UUUUCGCACACUCUGAGAACCGAAAACGGAAAAGUGCCCGGGAAAAACAAUUGGAAAAUCACCGCACAGCGACGUGCGGACCAAAUUGUGGGGCUCUCAAGGGGGCGGCAUUUGUGGCAA .....((.(((........(((....)))..(((((((........((((((((.......((((((......)))))).)).))))))...(((((....))))))))))))))))).. ( -37.70) >consensus UUUUCGCACACUCUGAGAACCGAAAACGGAAAAGUGCCCGGGAAAAACAAUUGGAAAAUCACCGCACAGCGACGUGCGGACCAAAUUGUGGGGCUCUCAAGGGGGCGGCAUUUGUGGCAA .....((.(((........(((....)))..(((((((........((((((((.......((((((......)))))).)).))))))...(((((....))))))))))))))))).. (-37.57 = -37.47 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:56 2006