Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,318,541 – 12,318,661 |
Length | 120 |
Max. P | 0.699688 |
Location | 12,318,541 – 12,318,661 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.22 |
Mean single sequence MFE | -39.03 |
Consensus MFE | -34.69 |
Energy contribution | -34.97 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.03 |
Mean z-score | -1.65 |
Structure conservation index | 0.89 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.699688 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12318541 120 - 27905053 CAAGGAGAUCCUACGGCUGCAGGCCUAUCCACGUUCCACGGCCGCCCUCAAAGGCGCCGAUGCCAGUGGAGACCACAAGUACUUCAACCUAACGGAGCACAAUGCCACCACGCUGGUGGU ..(((....)))..(((.....))).......(((((.((((.(((......))))))).(((..((((...))))..)))............))))).....((((((.....)))))) ( -40.40) >DroSec_CAF1 9796 120 - 1 CAAGGAGAUCCUCCGGCUGCAGGCCUAUCCACGCUCCACGGCCGCCCUCAAAGGCGCCGAUGCCAGCGGAGACCACAAGUACUUCAACCUCACGGAGCACAAUGCCACCACGCUGGUGGU ...((((...))))(((.....))).......(((((.((((.(((......)))))))........((((((.....)).))))........))))).....((((((.....)))))) ( -43.00) >DroSim_CAF1 5895 120 - 1 CAAGGAGAUCCUCCGGCUGCAGGCCUAUCCACGCUCCACGGCCGCCCUCAAAGGCGCCGAUGCCAGCGGAGACCACAAGUACUUCAACCUCACGGAGCACANNNNNNNNNNNNNNNNNNN ...((((...))))(((.....))).......(((((.((((.(((......)))))))........((((((.....)).))))........)))))...................... ( -33.70) >consensus CAAGGAGAUCCUCCGGCUGCAGGCCUAUCCACGCUCCACGGCCGCCCUCAAAGGCGCCGAUGCCAGCGGAGACCACAAGUACUUCAACCUCACGGAGCACAAUGCCACCACGCUGGUGGU ..(((....)))..(((.....))).......(((((.((((.(((......)))))))........((((((.....)).))))........))))).....((((((.....)))))) (-34.69 = -34.97 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:53 2006