Locus 4666

Sequence ID 3R_DroMel_CAF1
Location 12,311,561 – 12,311,680
Length 119
Max. P 0.819938
window7659

overview

Window 9

Location 12,311,561 – 12,311,680
Length 119
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 71.11
Mean single sequence MFE -33.63
Consensus MFE -19.71
Energy contribution -19.49
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -1.60
Structure conservation index 0.59
SVM decision value 0.68
SVM RNA-class probability 0.819938
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12311561 119 - 27905053
ACAAAUUCUUCCCGUGUCUC-UUGCAGACGUCUCUGGUCUCAGCGUGAUUUCUCCGCCUCCGAUGCCGGUCUCACCUAUACCAUCGCUGGCAUCGGAUCUCCUCGUGGCCAGAAGCAGCG
............(((((((.-....))))(..(((((((.(.(((.((....))))).((((((((((((...............)))))))))))).......).)))))))..).))) ( -41.96)
>DroSec_CAF1 2860 120 - 1
ACAAUUUCUUCCCAUGUCUCAUUGCAGACGUCUCUGGUCGCAGCGUGAUUUCUCCGCCUCCGAUGCCGGUCUCACCUAUACCAUCGCAGGCAUCGGAUCUGAUCGUGGCCAGAAGCAGCG
...............((((......))))(..(((((((((.(((.((....))))).(((((((((.((...............)).))))))))).......)))))))))..).... ( -40.76)
>DroSim_CAF1 2840 120 - 1
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAUUUCUCCGCCUCCGAUGCCGGUCUCACCUAUACCAUCGCAGGUAUCGGAUCUCCUCGUGGCCAGAAGCAGCG
..............................................(.(((((..((((((((((((.((...............)).))))))))).........))).)))))).... ( -18.16)
>consensus
ACAA_UUCUUCCC_UGUCUC_UUGCAGACGUCUCUGGUC_CAGCGUGAUUUCUCCGCCUCCGAUGCCGGUCUCACCUAUACCAUCGCAGGCAUCGGAUCUCCUCGUGGCCAGAAGCAGCG
..............................................(.(((((..((((((((((((.((...............)).))))))))).........))).)))))).... (-19.71 = -19.49 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:52 2006