Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,295,034 – 12,295,138 |
Length | 104 |
Max. P | 0.569033 |
Location | 12,295,034 – 12,295,138 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 78.72 |
Mean single sequence MFE | -40.60 |
Consensus MFE | -23.52 |
Energy contribution | -23.22 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.35 |
Mean z-score | -1.61 |
Structure conservation index | 0.58 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569033 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12295034 104 - 27905053 GCUUGGAAAAUGUCGCUGGAUGGCGGUAGGUUGCGCUACGAAGACGAAAAUGGUAAAACCGUGGUUCUGGCAGCCAAAGGGCGCACCUUCCAGGUGGGCUCCUA ..........(..((((....))))..)((((((((((((...((.......)).....))))))....))))))..(((((.((((.....)))).)).))). ( -34.90) >DroPse_CAF1 42803 104 - 1 UCCAUCAAAAUGUCUUUGGAUGGCGCUAAAUUGCGGUAUGUUGACGAAAGCGGCUUGCCCGUGGUUGUGGCGGCCAAAGGACGCACCUUCCAGGUGGGUUCGUA ((((............))))(((((((((((..(((((.((((.(....))))).)).)))..))).)))).))))..((((.((((.....)))).))))... ( -40.30) >DroSec_CAF1 16286 104 - 1 GCUUGGAAAAUGUCGCUGGAUGGCGGCAGGUUGCGCUACGAGGACGAAAAUGGUAAAACCGUGGUUCUGGCAGCUAAAGGACGCACCUUCCAGGUGGGCUCCUA ....(.((..(((((((....)))))))..)).)(((.(.(((((....((((.....)))).))))).).)))...(((((.((((.....)))).).)))). ( -38.00) >DroEre_CAF1 15455 104 - 1 GCUUGGAAAAUGUCGCUGGAUGGCGCCAGGUUGCGCUACGAGGACGAAAAUGGUGGAACCGUGGUUCUGGCAGCCAAGGGGCGCACCUUCCAGGUGGGCUCCUA ...(((....((((.((.(.((((((......))))))).))))))....((.((((((....)))))).)).)))((((((.((((.....)))).)))))). ( -44.50) >DroAna_CAF1 14849 104 - 1 GCCUGAAAAAUGUCCCUCGAUGGUGCCCGGCUGCACUAUGUGGACAAGGAUGGCGCUGUCGUGGUGGUGCCCGCCAAGGGUCGCUCCUUCCAGGUCGGCGCCUA .(((......(((((..(.(((((((......)))))))).))))))))..(((((((.(.(((.(((((((.....))).))))....))).).))))))).. ( -45.50) >DroPer_CAF1 42871 104 - 1 UCCAGCAAAAUGUCUUUGGAUGGCGCUAAAUUGCGGUAUGUUGACGAAAGCGGCUUGCCCGUGGUUGUGGCGGCCAAAGGACGCACCUUCCAGGUGGGUUCGUA ((((((.....))...))))(((((((((((..(((((.((((.(....))))).)).)))..))).)))).))))..((((.((((.....)))).))))... ( -40.40) >consensus GCCUGGAAAAUGUCGCUGGAUGGCGCCAGGUUGCGCUACGAGGACGAAAAUGGCAAAACCGUGGUUCUGGCAGCCAAAGGACGCACCUUCCAGGUGGGCUCCUA ..........((((......((((((......))))))....))))...((((.....))))((((.....))))...((((.((((.....)))).))))... (-23.52 = -23.22 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:47 2006