Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,289,713 – 12,289,824 |
Length | 111 |
Max. P | 0.728248 |
Location | 12,289,713 – 12,289,824 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 76.27 |
Mean single sequence MFE | -27.61 |
Consensus MFE | -13.34 |
Energy contribution | -16.46 |
Covariance contribution | 3.12 |
Combinations/Pair | 1.14 |
Mean z-score | -1.90 |
Structure conservation index | 0.48 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.728248 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12289713 111 + 27905053 UUUCGACAAUUACUUGAUCCUUUUCACUAGAAGAAGGCAACUCAUCAGGAUGUGCCUCUUCUAAGGGUUCUCUUUCAGGCGAUGUUUCGAUGAUUGGUUUAAUAG------UAUCAU ..((((..((..(((((......((..(((((((.((((..((.....))..)))))))))))..)).......)))))..))...))))....((((.......------.)))). ( -26.22) >DroSec_CAF1 10946 110 + 1 UUUCGACAAUUACUUGAUCCUUUUCACUAGAAGAAGGCAACUCAUCAGGAUGUGCCUCUACUGGAGGUUCUCUUUCAGGUGAUGUUUCGAUUAUUGGUUUAAUAG------UAUCA- ..((((..(((((((((......((.((((.(((.((((..((.....))..))))))).)))).)).......)))))))))...)))).(((((......)))------))...- ( -27.32) >DroSim_CAF1 9319 110 + 1 UUUCGACAAUUACUUGAUCCUUUACACUAGAAGAAGGCAACUCAUCAGGAUGUGCCGCUACUGGAGGUUCUCUUUCAGGUGAUGUUUCGAUUAUUGGUUUAAUAG------UAUCA- ..((((..(((((((((......((.((((.((..((((..((.....))..)))).)).))))..))......)))))))))...)))).(((((......)))------))...- ( -25.50) >DroEre_CAF1 10254 113 + 1 UUUCGGCAG---CUUCAUCAUUUUCACUAACAGAAGGCACUUCAUCAGGACAUUCUUCUUCUGGAGGUGCUCUUUCUGGUGAAGUUUCGAUUAUUGGUUUAAUGGUAUUAUUAUCA- ..((((.((---((((((((..(((.......)))((((((((..(((((........))))))))))))).....))))))))))))))............(((((....)))))- ( -29.90) >DroYak_CAF1 10307 107 + 1 UUUCGAUAGCUACUUCAUCACUUACACAUACAGGAGGCACCUUAUCAGGACAUGCUUCUUCUAGAGGUUCUUCCUCAGGUGAAGAUUCGAUGACUA---------CAUCAUCAACA- ............(((((((.........((.(((((((((((....)))...)))))))).))((((.....)))).)))))))....(((((...---------..)))))....- ( -29.10) >consensus UUUCGACAAUUACUUGAUCCUUUUCACUAGAAGAAGGCAACUCAUCAGGAUGUGCCUCUUCUGGAGGUUCUCUUUCAGGUGAUGUUUCGAUUAUUGGUUUAAUAG______UAUCA_ ..((((..(((((((((......((.((((.((.(((((..((.....))..))))))).)))).)).......)))))))))...))))........................... (-13.34 = -16.46 + 3.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:45 2006