Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,280,293 – 12,280,387 |
Length | 94 |
Max. P | 0.753563 |
Location | 12,280,293 – 12,280,387 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 91.28 |
Mean single sequence MFE | -33.24 |
Consensus MFE | -28.49 |
Energy contribution | -28.57 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.09 |
Mean z-score | -1.40 |
Structure conservation index | 0.86 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.753563 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12280293 94 + 27905053 AAAGUGCCGAGCUCCAAUUCCGUUUCUUCUCAUAGCUGGGAUCCUUGUGAUCCUGGAAGCAUCCCGCACAGAGGCUGCCGUCCCUCGGCAGCCG ...((((.(((((((......(((.........))).((((((.....)))))))).))).))..))))...((((((((.....)))))))). ( -36.00) >DroSec_CAF1 1589 94 + 1 AAAGUGCCGAGCUCCGUUUCUGUUUCUUCUCAUAGCUGGGAUCCUUGUGAUCCUGGAAGCAUACCACACAGAGGCUGCCGUCCCUCGGCAGCCG ...(((....(((((....((((........))))..((((((.....)))))))).)))....))).....((((((((.....)))))))). ( -32.60) >DroSim_CAF1 7 94 + 1 AAAGUGCCGAGCUCCGAUUCCGUUUCUUCUCAUAGCUGGGAUCCUCGUGAUCCUGGAAGCAUCCCACACAGGUGCUGCCGUCCCUCGGCAGCCG ...(((..((((((((((..((.....(((((....)))))....))..)))..)).))).))...)))..(.(((((((.....)))))))). ( -30.40) >DroEre_CAF1 10 94 + 1 AAAGUGCCGAGCUCCGAUUCCGUUUCAUCUCAUAGCUGGGAUCCUUGUGAUCCUGGAAGCAUCUCGCGUAGAGGCUGCCGCCCCCCGGCAGCCG ....(((((((......(((((((.........))).((((((.....))))))))))....)))).)))..((((((((.....)))))))). ( -33.90) >DroYak_CAF1 7 94 + 1 AAAGUGCCGAGCUCCGAUUCCGAUUCUUCUCAUAGCCGGGGUCCUUGUGAUCCUGGAAGCAUCUCGCGCAGAUGCUGCCGUUCCCCGGCAGCCG ...((((.(((((.((....)).............((((((((.....)))))))).))).))..))))....(((((((.....))))))).. ( -33.30) >consensus AAAGUGCCGAGCUCCGAUUCCGUUUCUUCUCAUAGCUGGGAUCCUUGUGAUCCUGGAAGCAUCCCGCACAGAGGCUGCCGUCCCUCGGCAGCCG ...((((.(((.................)))....((((((((.....))))))))..))))..........((((((((.....)))))))). (-28.49 = -28.57 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:44 2006