Locus 4659

Sequence ID 3R_DroMel_CAF1
Location 12,279,511 – 12,279,630
Length 119
Max. P 0.778750
window7650

overview

Window 0

Location 12,279,511 – 12,279,630
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 87.45
Mean single sequence MFE -29.41
Consensus MFE -21.55
Energy contribution -21.18
Covariance contribution -0.37
Combinations/Pair 1.15
Mean z-score -1.91
Structure conservation index 0.73
SVM decision value 0.55
SVM RNA-class probability 0.778750
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12279511 119 - 27905053
ACCACUUGACCAGCAUCGAUAGUCCUAUAAAAGUGUCGAUGUUUCGAUAAAAG-GCCACACAGUGGAAUACUCGCCCAACUUAGCUGCGGUCACACUUAGUCUGCAAUUUUCAAGAAUUA
....(((((..((((((((((.(........).)))))))))).(((......-.((((...)))).....)))...........(((((.(.......).)))))....)))))..... ( -24.70)
>DroSim_CAF1 20701 120 - 1
ACCACUUGACCAACAUCGAUAGUUCUAUACAAGUAUCGAUGUUUCGAUAAAAGGGCCACACAGUGGAAUACUCGCCUAACUCAGCUGCGGGCACACUUAGUCUGCAAUUUUCAAGAAUUA
....(((((..((((((((((.((......)).)))))))))).........(((((((...)))((....))))))........(((((((.......)))))))....)))))..... ( -30.10)
>DroEre_CAF1 20776 119 - 1
ACCUCUUGACCAACAUCGAUAGUCCUAAAAUGGUAUCGAUGUCUUAGUACAAG-GUCACACAGUGGAAUACUUGUCAAACUGAGCUGCGGUCACACUUAGUCUGCAAUUUUCAAGAAUUA
...((((((...(((((((((..((......)))))))))))(((((((((((-.((((...))))....)))))...)))))).(((((.(.......).)))))....)))))).... ( -33.30)
>DroYak_CAF1 20919 119 - 1
ACCUCUUGAUCAACAUCGAUAGUCCAAAAAUGGUAUCGAUGUUUUAGUAAAAG-GUCACACAAUGGAAUUCUUGGCCAACUGAGCUGCGGUCACACUUAGUCUGCAAUUUUCAAGAUUUA
...((((((..((((((((((..(((....)))))))))))))(((((....(-((((..............))))).)))))..(((((.(.......).)))))....)))))).... ( -29.54)
>consensus
ACCACUUGACCAACAUCGAUAGUCCUAAAAAAGUAUCGAUGUUUCAAUAAAAG_GCCACACAGUGGAAUACUCGCCCAACUGAGCUGCGGUCACACUUAGUCUGCAAUUUUCAAGAAUUA
....(((((..((((((((((.(........).))))))))))............((((...))))...................(((((.(.......).)))))....)))))..... (-21.55 = -21.18 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:43 2006