Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,278,564 – 12,278,684 |
Length | 120 |
Max. P | 0.650494 |
Location | 12,278,564 – 12,278,684 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.20 |
Mean single sequence MFE | -34.71 |
Consensus MFE | -28.60 |
Energy contribution | -28.41 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.07 |
Mean z-score | -1.63 |
Structure conservation index | 0.82 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650494 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12278564 120 - 27905053 CCCCCACCCACACACACUCUUAUACAAUAAAGAGAGAGAAAGCCGCUGGAAAAUGAGCUUCACCAAGUGGUUCAAGAAGAAGGGCGGAGAUGGGGGAUCGAUCUCAGAGAUCGGUGCACC (((((((((.......(((((........))))).......(((.((......((((((.(.....).))))))......))))))).).))))))(((((((.....)))))))..... ( -38.60) >DroSim_CAF1 19751 120 - 1 CCCGCACACACACACACUCUUAUACAAUAAAGAGAGAGAAAGCCGCUGAAAAAUGAGCUUCACCAAGUGGUUCAAGAAAAAGGGCGGAGAUGGGGGAUCGAUCUCCGAGAUCGGUGCACC ...((((.........(((((........)))))...((..(((.((......((((((.(.....).))))))......)))))((((((.(.....).))))))....)).))))... ( -32.70) >DroEre_CAF1 19823 118 - 1 CCC-CGCACACACACACUCUCAUACA-UAAAAAGAGAGAAAGCCGCUAGAAAAUGAGCUUCACCAAGUGGUUCAAGAAGAAGGGCGGAGAUGGGGGAUCGAUCUCCGAGAUCGGUGCACC (((-(((.........(((((.....-......)))))....(((((......((((((.(.....).))))))........))))).).))))).(((((((.....)))))))..... ( -34.84) >DroYak_CAF1 19967 116 - 1 CCC-CGCACA--CACACUUUCAUACA-CAAAGAGAGAGAAAGCCGCUGGAAAAUGAGCUUCACGAAGUGGUUCAAAAAGAAGGGCGGAGAUGGAGGAUCGAUCUCCGAGAUCGGUGCACC ...-.((((.--....(((((.....-....))))).((..(((.((......((((((.(.....).))))))......)))))((((((.(.....).))))))....)).))))... ( -32.70) >consensus CCC_CACACACACACACUCUCAUACA_UAAAGAGAGAGAAAGCCGCUGGAAAAUGAGCUUCACCAAGUGGUUCAAGAAGAAGGGCGGAGAUGGGGGAUCGAUCUCCGAGAUCGGUGCACC (((.............(((((............)))))....(((((......((((((.(.....).))))))........)))))....)))(.(((((((.....))))))).)... (-28.60 = -28.41 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:42 2006